visMOP - A Visual Analytics Approach for Multi-omics Pathways

被引:1
|
作者
Brich, N. [1 ]
Schacherer, N. [1 ]
Hoene, M. [2 ]
Weigert, C. [2 ]
Lehmann, R. [2 ]
Krone, M. [1 ,3 ]
机构
[1] Univ Tubingen, Inst Bioinformat & Med Informat, Tubingen, Germany
[2] Univ Hosp Tubingen, Inst Clin Chem & Pathobiochem, Tubingen, Germany
[3] NYU, Tandon Sch Engn, New York, NY USA
关键词
OF-THE-ART; GENE; KNOWLEDGEBASE; VISUALIZATION; REACTOME;
D O I
10.1111/cgf.14828
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
We present an approach for the visual analysis of multi-omics data obtained using high-throughput methods. The term "omics" denotes measurements of different types of biologically relevant molecules like the products of gene transcription (transcriptomics) or the abundance of proteins (proteomics). Current popular visualization approaches often only support analyzing each of these omics separately. This, however, disregards the interconnectedness of different biologically relevant molecules and processes. Consequently, it describes the actual events in the organism suboptimally or only partially. Our visual analytics approach for multi-omics data provides a comprehensive overview and details-on-demand by integrating the different omics types in multiple linked views. To give an overview, we map the measurements to known biological pathways and use a combination of a clustered network visualization, glyphs, and interactive filtering. To ensure the effectiveness and utility of our approach, we designed it in close collaboration with domain experts and assessed it using an exemplary workflow with real-world transcriptomics, proteomics, and lipidomics measurements from mice.
引用
收藏
页码:259 / 270
页数:12
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