Crystal structure, Hirshfeld surface, DFT and molecular docking studies of 2-{4-[(E)-(4-acetylphenyl)diazenyl]phenyl}-1-(5-bromothiophen-2-yl)-ethanone; a compound with bromine•••oxygen-type contacts

被引:0
|
作者
Kumar, S. Santhosh [1 ]
Srinivasa, H. T. [2 ]
Kumar, M. Harish [3 ]
Devarajegowda, H. C. [3 ]
Palakshamurthy, B. S. [1 ]
机构
[1] Tumkur Univ, Dept PG Studies & Res Phys, UCS, Albert Einstein Block, Tumkur 572103, Karnataka, India
[2] Raman Res Inst, CV Raman Ave, Bangalore, Karnataka, India
[3] Univ Mysore, Dept Phys, Yuvarajas Coll, Mysore 570005, Karnataka, India
关键词
crystal structure; azobenzene; molecular docking; C-Br center dot center dot center dot O=C contact; DFT and Hirshfeld surface; DERIVATIVES; AZOBENZENE;
D O I
10.1107/S2056989024010776
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
The title compound, C19H13BrN2O3S, a non-liquid crystal molecule, crystallizes in the orthorhombic system, space group Pna2(1). The torsion angles associated with ester and azo groups are -177.0 (4)degrees, -anti-periplanar, and 179.0 (4)degrees, +anti-periplanar, respectively. The packing is consolidated by a weak C-Br center dot center dot center dot O=C contact, forming infinite chains running along the [001] direction. A Hirshfeld surface analysis revealed that the major contributions to the crystal surface are from H center dot center dot center dot H, C center dot center dot center dot H/H center dot center dot center dot C, O center dot center dot center dot H/H center dot center dot center dot O, Br center dot center dot center dot H/H center dot center dot center dot Br and S center dot center dot center dot H/H center dot center dot center dot S interactions. The computed three-dimensional energy interactions using the basis set B3LYP\631-G(d,p) show that E-dis (217.6 kJ mol(-1)) is the major component in the structure. The DFT calculations performed at the B3LYP/6-311+ G(d,p) level indicate that the energy gap between HOMO and LUMO is 3.6725 (2) eV. The molecular electrostatic potential (MEP) map generated supports the existence of the Br center dot center dot center dot O type contact, formed between the electrophilic site of the bromine atom and the nucleophilic site of the ketonic oxygen atom. The molecular docking between the ligand and the Mycobacterium Tuberculosis (PDB ID:1HZP) receptor shows a good binding affinity value of -8.5 kcal mol(-1).
引用
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页码:1308 / +
页数:10
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