Crystal structure, Hirshfeld surface, DFT and molecular docking studies of 2-{4-[(E)-(4-acetylphenyl)diazenyl]phenyl}-1-(5-bromothiophen-2-yl)-ethanone; a compound with bromine•••oxygen-type contacts

被引:0
|
作者
Kumar, S. Santhosh [1 ]
Srinivasa, H. T. [2 ]
Kumar, M. Harish [3 ]
Devarajegowda, H. C. [3 ]
Palakshamurthy, B. S. [1 ]
机构
[1] Tumkur Univ, Dept PG Studies & Res Phys, UCS, Albert Einstein Block, Tumkur 572103, Karnataka, India
[2] Raman Res Inst, CV Raman Ave, Bangalore, Karnataka, India
[3] Univ Mysore, Dept Phys, Yuvarajas Coll, Mysore 570005, Karnataka, India
关键词
crystal structure; azobenzene; molecular docking; C-Br center dot center dot center dot O=C contact; DFT and Hirshfeld surface; DERIVATIVES; AZOBENZENE;
D O I
10.1107/S2056989024010776
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
The title compound, C19H13BrN2O3S, a non-liquid crystal molecule, crystallizes in the orthorhombic system, space group Pna2(1). The torsion angles associated with ester and azo groups are -177.0 (4)degrees, -anti-periplanar, and 179.0 (4)degrees, +anti-periplanar, respectively. The packing is consolidated by a weak C-Br center dot center dot center dot O=C contact, forming infinite chains running along the [001] direction. A Hirshfeld surface analysis revealed that the major contributions to the crystal surface are from H center dot center dot center dot H, C center dot center dot center dot H/H center dot center dot center dot C, O center dot center dot center dot H/H center dot center dot center dot O, Br center dot center dot center dot H/H center dot center dot center dot Br and S center dot center dot center dot H/H center dot center dot center dot S interactions. The computed three-dimensional energy interactions using the basis set B3LYP\631-G(d,p) show that E-dis (217.6 kJ mol(-1)) is the major component in the structure. The DFT calculations performed at the B3LYP/6-311+ G(d,p) level indicate that the energy gap between HOMO and LUMO is 3.6725 (2) eV. The molecular electrostatic potential (MEP) map generated supports the existence of the Br center dot center dot center dot O type contact, formed between the electrophilic site of the bromine atom and the nucleophilic site of the ketonic oxygen atom. The molecular docking between the ligand and the Mycobacterium Tuberculosis (PDB ID:1HZP) receptor shows a good binding affinity value of -8.5 kcal mol(-1).
引用
收藏
页码:1308 / +
页数:10
相关论文
共 50 条
  • [31] Molecular structure, spectroscopic investigations and computational study on the potential molecular switch of (E)-1-(4-(2-hydroxybenzylideneamino)phenyl)ethanone
    Kanaani, Ayoub
    Ajloo, Davood
    Kiyani, Hamzeh
    Ghasemian, Hasan
    Vakili, Mohammad
    Feizabadi, Mina
    MOLECULAR PHYSICS, 2016, 114 (13) : 2081 - 2097
  • [32] Crystal structure, Hirshfeld surface analysis, DFT optimized molecular structure and the molecular docking studies of 1-[2-(cyanosulfanyl)acetyl]-3-methyl-2,6-bis(4-methylphenyl)piperidin-4-one
    Karthiga, A. R.
    Divyabharathi, S.
    Shalo, R. Reshwen
    Rajeswari, K.
    Vidhyasagar, T.
    Selvanayagam, S.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2024, 80 : 1014 - +
  • [33] Synthesis and crystal structure, Hirshfeld surface analysis, and DFT calculation of 2-((4-(1-benzyl-2-methyl-4-nitro-1 H -imidazol-5-yl)piperazin-1-yl)methyl)-5-phenyl-1,3,4-oxadiazole
    Rasras, Anas J.
    -Far, Rawhi H. Al
    Younes, Eyad A.
    Shakdofa, Mohamad M.
    Al-Rifai, Nafisah M.
    JOURNAL OF MOLECULAR STRUCTURE, 2023, 1280
  • [34] Molecular spectroscopic investigation, quantum chemical, molecular docking and biological evaluation of 2-(4-Chlorophenyl)-1-[3-(4-chlorophenyl)-5-[4-(propan-2-yl) phenyl-3, 5-dihydro-1H-pyrazole-yl] ethanone
    Sivakumar, C.
    Balachandran, V.
    Narayana, B.
    Salian, Vinutha V.
    Revathi, B.
    Shanmugapriya, N.
    Vanasundari, K.
    JOURNAL OF MOLECULAR STRUCTURE, 2021, 1224
  • [35] Crystal structure of (E)-4-{1-[2-(carbamothioyl)hydrazin-1-ylidene]ethyl}-phenyl 4-methylbenzoate
    Mani, Karthik Ananth
    Viswanathan, Vijayan
    Narasimhan, S.
    Velmurugan, Devadasan
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2015, 71 : O43 - +
  • [36] Synthesis, crystal and molecular structure, DFT, vibrational spectroscopic, hirshfeld surfaces analyses and molecular docking of a novel compound N-(3-((1-(5-bromo-2-(pyrrolidin-1-yl)phenyl)-5-oxo- [1,2,4]triazolo[4,3-a]quinazolin-4(5H)-yl)methyl)phenyl)-2-thiomorpholinoacetamide
    Chen, Yu-Mei
    Wang, Zhong-Yuan
    Chen, Dong-Mei
    Ye, Wen-Jun
    Liao, Tian-Hui
    Zhao, Chun-Shen
    Liao, Wei-Ke
    Zhou, Zhi-Xu
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1250
  • [37] Synthesis, crystal and molecular structure, DFT, vibrational spectroscopic, hirshfeld surfaces analyses and molecular docking of a novel compound N-(3-((1-(5-bromo-2-(pyrrolidin-1-yl)phenyl)-5-oxo-[1,2,4]triazolo[4,3-a]quinazolin-4(5H)-yl)methyl)phenyl)-2-thiomorpholinoacetamide
    Chen, Yu-Mei
    Wang, Zhong-Yuan
    Chen, Dong-Mei
    Ye, Wen-Jun
    Liao, Tian-Hui
    Zhao, Chun-Shen
    Liao, Wei-Ke
    Zhou, Zhi-Xu
    Journal of Molecular Structure, 2022, 1250
  • [38] Combined experimental and DFT computational studies on (E)-1-(5-nitrothiophen-2-yl)-N-[4-(trifluoromethyl)phenyl] methanimine
    Tanak, Hasan
    Agar, Aysen Alaman
    Buyukgungor, Orhan
    JOURNAL OF MOLECULAR STRUCTURE, 2013, 1048 : 41 - 50
  • [39] Induced Fit Docking (IFD) Study of the Solid State Structure of (2E)-1-(5-bromothiophen-2-yl)-3-[4-(dimethylamino)phenyl]prop-2-en-1-one - Fragment Based Design Approach for Human Aldose Reductase Inhibition
    Vepuri, Suresh B.
    Devarajegowda, H. C.
    Anbazhagan, S.
    Prasad, Y. Rajendra
    LETTERS IN DRUG DESIGN & DISCOVERY, 2012, 9 (08) : 789 - 796
  • [40] Crystal Structure and Hirshfeld Surface Analysis of 1-(4-Chlorophenyl)-5-{4-[(2-methylphenyl)methoxy]phenyl}-1H-Pyrazole
    Aydin, Abdullah
    Akkurt, Mehmet
    Turanli, Sumeyye
    Banoglu, Erden
    Ozcelik, Nefise
    X-RAY STRUCTURE ANALYSIS ONLINE, 2021, 37 : 77 - 79