LCKGCN: Identifying Potential Circrna-Disease Associations Based on Large Convolutional Kernel and Graph Convolutional Network

被引:0
|
作者
Zhang, Yushu [1 ]
Yuan, Lin [2 ,3 ,4 ]
Li, Zhujun [5 ]
机构
[1] Nantong Univ, Sch Art, Nantong, Jiangsu, Peoples R China
[2] Qilu Univ Technol, Shandong Comp Sci Ctr, Key Lab Comp Power Network & Informat Secur, Minist Educ,Shandong Acad Sci, Jinan, Peoples R China
[3] Qilu Univ Technol, Fac Comp Sci & Technol, Shandong Engn Res Ctr Big Data Appl Technol, Shandong Acad Sci, Jinan, Peoples R China
[4] Shandong Fundamental Res Ctr Comp Sci, Shandong Prov Key Lab Comp Networks, Jinan, Peoples R China
[5] Jinan Springs Patent & Trademark Off, Jinan, Peoples R China
基金
中国国家自然科学基金;
关键词
circRNA-disease; multi-source data; large convolutional kernel; graph convolutional network;
D O I
10.1007/978-981-97-5692-6_20
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
circRNA plays an important role in multicellular organisms, and circRNA has important functions in many complex diseases. CircRNA-disease association prediction helps to find potential biomarkers of diseases. However, existing methods cannot effectively use information from multi-source data and cannot effectively extract important features of signatures. In this paper, we propose a circRNA-disease association prediction method LCKGCN (prediction circRNA-disease associations based on Large Convolutional Kernel and Graph Convolutional Network), which uses large convolution kernels to effectively redefine the information distribution in multi-source data, and uses graph convolution networks to effectively obtain potentially important features in multi-source data. The results of five-fold and ten-fold cross-validation in the data show that LCKGCN is better than existing methods. We used LCKGCN to predict 10 disease-associated circRNAs, 8 of which have been reported in relevant literature, proving that our method can effectively predict disease-associated circRNAs.
引用
收藏
页码:223 / 231
页数:9
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