LCKGCN: Identifying Potential Circrna-Disease Associations Based on Large Convolutional Kernel and Graph Convolutional Network

被引:0
|
作者
Zhang, Yushu [1 ]
Yuan, Lin [2 ,3 ,4 ]
Li, Zhujun [5 ]
机构
[1] Nantong Univ, Sch Art, Nantong, Jiangsu, Peoples R China
[2] Qilu Univ Technol, Shandong Comp Sci Ctr, Key Lab Comp Power Network & Informat Secur, Minist Educ,Shandong Acad Sci, Jinan, Peoples R China
[3] Qilu Univ Technol, Fac Comp Sci & Technol, Shandong Engn Res Ctr Big Data Appl Technol, Shandong Acad Sci, Jinan, Peoples R China
[4] Shandong Fundamental Res Ctr Comp Sci, Shandong Prov Key Lab Comp Networks, Jinan, Peoples R China
[5] Jinan Springs Patent & Trademark Off, Jinan, Peoples R China
基金
中国国家自然科学基金;
关键词
circRNA-disease; multi-source data; large convolutional kernel; graph convolutional network;
D O I
10.1007/978-981-97-5692-6_20
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
circRNA plays an important role in multicellular organisms, and circRNA has important functions in many complex diseases. CircRNA-disease association prediction helps to find potential biomarkers of diseases. However, existing methods cannot effectively use information from multi-source data and cannot effectively extract important features of signatures. In this paper, we propose a circRNA-disease association prediction method LCKGCN (prediction circRNA-disease associations based on Large Convolutional Kernel and Graph Convolutional Network), which uses large convolution kernels to effectively redefine the information distribution in multi-source data, and uses graph convolution networks to effectively obtain potentially important features in multi-source data. The results of five-fold and ten-fold cross-validation in the data show that LCKGCN is better than existing methods. We used LCKGCN to predict 10 disease-associated circRNAs, 8 of which have been reported in relevant literature, proving that our method can effectively predict disease-associated circRNAs.
引用
收藏
页码:223 / 231
页数:9
相关论文
共 50 条
  • [11] GATCDA: Predicting circRNA-Disease Associations Based on Graph Attention Network
    Bian, Chen
    Lei, Xiu-Juan
    Wu, Fang-Xiang
    CANCERS, 2021, 13 (11)
  • [12] RGCNCDA: Relational graph convolutional network improves circRNA-disease association prediction by incorporating microRNAs
    Chen, Yaojia
    Wang, Yanpeng
    Ding, Yijie
    Su, Xi
    Wang, Chunyu
    COMPUTERS IN BIOLOGY AND MEDICINE, 2022, 143
  • [13] A Unified Graph Attention Network Based Framework for Inferring circRNA-Disease Associations
    Ji, Cun-Mei
    Liu, Zhi-Hao
    Qiao, Li-Juan
    Wang, Yu-Tian
    Zheng, Chun-Hou
    INTELLIGENT COMPUTING METHODOLOGIES, PT III, 2022, 13395 : 639 - 653
  • [14] KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network
    Lan, Wei
    Dong, Yi
    Chen, Qingfeng
    Zheng, Ruiqing
    Liu, Jin
    Pan, Yi
    Chen, Yi-Ping Phoebe
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (01)
  • [15] Identifying circRNA-disease association based on relational graph attention network and hypergraph attention network
    Lu, PengLi
    Wu, Jinkai
    Zhang, Wenqi
    ANALYTICAL BIOCHEMISTRY, 2024, 694
  • [16] Predicting circRNA-disease associations based on autoencoder and graph embedding
    Yang, Jing
    Lei, Xiujuan
    INFORMATION SCIENCES, 2021, 571 : 323 - 336
  • [17] Predicting circRNA-disease associations based on autoencoder and graph embedding
    Yang, Jing
    Lei, Xiujuan
    Information Sciences, 2021, 571 : 323 - 336
  • [18] iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction
    Yuan, Lin
    Zhao, Jiawang
    Shen, Zhen
    Zhang, Qinhu
    Geng, Yushui
    Zheng, Chun-Hou
    Huang, De-Shuang
    PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (08)
  • [19] NSL2CD: identifying potential circRNA-disease associations based on network embedding and subspace learning
    Xiao, Qiu
    Fu, Yu
    Yang, Yide
    Dai, Jianhua
    Luo, Jiawei
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (06)
  • [20] An efficient approach based on multi-sources information to predict circRNA-disease associations using deep convolutional neural network
    Wang, Lei
    You, Zhu-Hong
    Huang, Yu-An
    Huang, De-Shuang
    Chan, Keith C. C.
    BIOINFORMATICS, 2020, 36 (13) : 4038 - 4046