Deep Learning-Based Drug Compounds Discovery for Gynecomastia

被引:0
|
作者
Lu, Yeheng [1 ]
Kim, Byeong Seop [2 ]
Zeng, Junhao [1 ]
Chen, Zhiwei [3 ]
Zhu, Mengyu [4 ]
Tang, Yuxi [2 ]
Pan, Yuyan [1 ]
机构
[1] Fudan Univ, Zhongshan Hosp, Dept Plast & Reconstruct Surg, Shanghai 200032, Peoples R China
[2] Shanghai Jiao Tong Univ, Shanghai Peoples Hosp 9, Sch Med, Dept Plast & Reconstruct Surg, Shanghai 200011, Peoples R China
[3] Fudan Univ, Zhongshan Hosp, Big Data & Artificial Intelligence Ctr, Shanghai 200032, Peoples R China
[4] Shanghai Jiao Tong Univ, Sch Med, Shanghai 200025, Peoples R China
关键词
gynecomastia; drug-target interactions (DTIs); DeepPurpose; deep learning (DL); drug therapy; BOYS;
D O I
10.3390/biomedicines13020262
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background: Gynecomastia, caused by an estrogen-testosterone imbalance, affects males across various age groups. With unclear mechanisms and no approved drugs, the condition underscores the need for efficient, innovative treatment strategies. Methods: This study utilized deep learning-based computational methods to discover potential drug compounds for gynecomastia. To identify genes and pathways associated with gynecomastia, initial analyses included text mining, biological process exploration, pathway enrichment and protein-protein interaction (PPI) network construction. Subsequently, drug-target interactions (DTIs) were examined to identify potential therapeutic compounds. The DeepPurpose toolkit was employed to predict interactions between these candidate drugs and gene targets, prioritizing compounds based on their predicted binding affinities. Results: Text mining identified 177 genes associated with gynecomastia. Gene Ontology (GO) biological process and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses identified critical genes and pathways, with notable involvement in signal transduction, cell proliferation and steroid hormone biosynthesis. PPI network analysis highlighted 10 crucial genes, such as IGF1, TGFB1 and AR. DTI analysis and DeepPurpose predictions identified 12 potential drugs, including conteltinib, yifenidone and vosilasarm, with high predicted binding affinities to the target genes. Conclusions: The study successfully identified potential drug compounds for gynecomastia using a deep learning-based approach. The findings highlight the effectiveness of combining text mining and artificial intelligence in drug discovery. This innovative method provides a new avenue for developing specific treatments for gynecomastia and underscores the need for further experimental validation and optimization of prediction models to support novel drug development.
引用
收藏
页数:11
相关论文
共 50 条
  • [31] Spectrum of deep learning algorithms in drug discovery
    Piroozmand, Firoozeh
    Mohammadipanah, Fatemeh
    Sajedi, Hedieh
    CHEMICAL BIOLOGY & DRUG DESIGN, 2020, 96 (03) : 886 - 901
  • [32] Deep Learning and Drug Discovery for Healthy Aging
    Wang, Peter
    Ho, Dean
    ACS CENTRAL SCIENCE, 2023, 9 (10) : 1860 - 1863
  • [33] Recent Progress of Deep Learning in Drug Discovery
    Wang, Feng
    Diao, XiaoMin
    Chang, Shan
    Xu, Lei
    CURRENT PHARMACEUTICAL DESIGN, 2021, 27 (17) : 2088 - 2096
  • [34] A Deep Learning-Based Feature Extraction and Knowledge Discovery Method for Spatiotemporal Graph Data
    Feng, Lei
    Wu, Fan
    Chai, Xuguang
    IEEE TRANSACTIONS ON COMPUTATIONAL SOCIAL SYSTEMS, 2024,
  • [35] Comprehensive bone marrow analysis integrating deep learning-based pattern discovery (BMDeep)
    Pontones, M.
    Hoefener, H.
    Kock, F.
    Schwen, L.
    Westphal, M.
    Dickel, N.
    Kunz, M.
    Metzler, M.
    KLINISCHE PADIATRIE, 2022, 234 (03): : 190 - 190
  • [36] Technology Opportunity Discovery using Deep Learning-based Text Mining and a Knowledge Graph
    Lee, MyoungHoon
    Kim, Suhyeon
    Kim, Hangyeol
    Lee, Junghye
    TECHNOLOGICAL FORECASTING AND SOCIAL CHANGE, 2022, 180
  • [37] DeepFDR: A Deep Learning-based False Discovery Rate Control Method for Neuroimaging Data
    Kim, Taehyo
    Shu, Hai
    Jia, Qiran
    de Leon, Mony J.
    INTERNATIONAL CONFERENCE ON ARTIFICIAL INTELLIGENCE AND STATISTICS, VOL 238, 2024, 238
  • [38] FL-QSAR: a federated learning-based QSAR prototype for collaborative drug discovery
    Chen, Shaoqi
    Xue, Dongyu
    Chuai, Guohui
    Yang, Qiang
    Liu, Qi
    BIOINFORMATICS, 2020, 36 (22-23) : 5492 - 5498
  • [39] A deep learning-based framework for automatic detection of drug resistance in tuberculosis patients
    Duwairi, Rehab
    Melhem, Abdullah
    EGYPTIAN INFORMATICS JOURNAL, 2023, 24 (01) : 139 - 148
  • [40] Bringing Structural Implications and Deep Learning-Based Drug Identification for KRAS Mutants
    Mehmood, Aamir
    Kaushik, Aman Chandra
    Wang, Qiankun
    Li, Cheng-Dong
    Wei, Dong-Qing
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2021, 61 (02) : 571 - 586