Deep Learning-Based Drug Compounds Discovery for Gynecomastia

被引:0
|
作者
Lu, Yeheng [1 ]
Kim, Byeong Seop [2 ]
Zeng, Junhao [1 ]
Chen, Zhiwei [3 ]
Zhu, Mengyu [4 ]
Tang, Yuxi [2 ]
Pan, Yuyan [1 ]
机构
[1] Fudan Univ, Zhongshan Hosp, Dept Plast & Reconstruct Surg, Shanghai 200032, Peoples R China
[2] Shanghai Jiao Tong Univ, Shanghai Peoples Hosp 9, Sch Med, Dept Plast & Reconstruct Surg, Shanghai 200011, Peoples R China
[3] Fudan Univ, Zhongshan Hosp, Big Data & Artificial Intelligence Ctr, Shanghai 200032, Peoples R China
[4] Shanghai Jiao Tong Univ, Sch Med, Shanghai 200025, Peoples R China
关键词
gynecomastia; drug-target interactions (DTIs); DeepPurpose; deep learning (DL); drug therapy; BOYS;
D O I
10.3390/biomedicines13020262
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Background: Gynecomastia, caused by an estrogen-testosterone imbalance, affects males across various age groups. With unclear mechanisms and no approved drugs, the condition underscores the need for efficient, innovative treatment strategies. Methods: This study utilized deep learning-based computational methods to discover potential drug compounds for gynecomastia. To identify genes and pathways associated with gynecomastia, initial analyses included text mining, biological process exploration, pathway enrichment and protein-protein interaction (PPI) network construction. Subsequently, drug-target interactions (DTIs) were examined to identify potential therapeutic compounds. The DeepPurpose toolkit was employed to predict interactions between these candidate drugs and gene targets, prioritizing compounds based on their predicted binding affinities. Results: Text mining identified 177 genes associated with gynecomastia. Gene Ontology (GO) biological process and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses identified critical genes and pathways, with notable involvement in signal transduction, cell proliferation and steroid hormone biosynthesis. PPI network analysis highlighted 10 crucial genes, such as IGF1, TGFB1 and AR. DTI analysis and DeepPurpose predictions identified 12 potential drugs, including conteltinib, yifenidone and vosilasarm, with high predicted binding affinities to the target genes. Conclusions: The study successfully identified potential drug compounds for gynecomastia using a deep learning-based approach. The findings highlight the effectiveness of combining text mining and artificial intelligence in drug discovery. This innovative method provides a new avenue for developing specific treatments for gynecomastia and underscores the need for further experimental validation and optimization of prediction models to support novel drug development.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] DeepBL: a deep learning-based approach for in silico discovery of beta-lactamases
    Wang, Yanan
    Li, Fuyi
    Bharathwaj, Manasa
    Rosas, Natalia C.
    Leier, Andre
    Akutsu, Tatsuya
    Webb, Geoffrey, I
    Marquez-Lago, Tatiana T.
    Li, Jian
    Lithgow, Trevor
    Song, Jiangning
    BRIEFINGS IN BIOINFORMATICS, 2021, 22 (04)
  • [22] Recent Progress in Machine Learning-based Prediction of Peptide Activity for Drug Discovery
    Wu, Qihui
    Ke, Hanzhong
    Li, Dongli
    Wang, Qi
    Fang, Jiansong
    Zhou, Jingwei
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2019, 19 (01) : 4 - 16
  • [23] Deep learning-based method for sentiment analysis for patients' drug reviews
    Al-Hadhrami, Sena
    Vinko, Tamas
    Al-Hadhrami, Tawfik
    Saeed, Faisal
    Qasem, Sultan Noman
    PEERJ COMPUTER SCIENCE, 2024, 10
  • [24] Deep Learning for Drug Discovery: A Study of Identifying High Efficacy Drug Compounds Using a Cascade Transfer Learning Approach
    Zhuang, Dylan
    Ibrahim, Ali K.
    APPLIED SCIENCES-BASEL, 2021, 11 (17):
  • [25] A comprehensive review of deep learning-based approaches for drug-drug interaction prediction
    Xia, Yan
    Xiong, An
    Zhang, Zilong
    Zou, Quan
    Cui, Feifei
    BRIEFINGS IN FUNCTIONAL GENOMICS, 2025, 24
  • [26] Deep learning-based method for sentiment analysis for patients’ drug reviews
    Al-Hadhrami S.
    Vinko T.
    Al-Hadhrami T.
    Saeed F.
    Qasem S.N.
    PeerJ Computer Science, 2024, 10
  • [27] Advancing drug discovery via GPU-based deep learning
    Gawehn, Erik
    Hiss, Jan A.
    Brown, J. B.
    Schneider, Gisbert
    EXPERT OPINION ON DRUG DISCOVERY, 2018, 13 (07) : 579 - 582
  • [28] Deep Learning for Ligand-Based Virtual Screening in Drug Discovery
    Bahi, Meriem
    Batouche, Mohamed
    2018 3RD INTERNATIONAL CONFERENCE ON PATTERN ANALYSIS AND INTELLIGENT SYSTEMS (PAIS), 2018, : 268 - 272
  • [29] The power of deep learning to ligand-based novel drug discovery
    Baskin, Igor I.
    EXPERT OPINION ON DRUG DISCOVERY, 2020, 15 (07) : 755 - 764
  • [30] DEEP LEARNING-BASED FEATURE FUSION AND TRANSFER LEARNING FOR APPROXIMATING pIC VALUE OF COVID-19 MEDICINE USING DRUG DISCOVERY DATA
    Dhaygude, Amol dattatray
    Hasan, Mehadi
    Vijay, M.
    JOURNAL OF MECHANICS IN MEDICINE AND BIOLOGY, 2024, 24 (05)