ANI neural network potentials for small molecule pKa prediction

被引:0
|
作者
Urquhart, Ross James [1 ]
van Teijlingen, Alexander [1 ]
Tuttle, Tell [1 ]
机构
[1] Univ Strathclyde, Dept Pure & Appl Chem, 295 Cathedral St, Glasgow City G1 1XL, Scotland
基金
英国工程与自然科学研究理事会;
关键词
GIBBS FREE-ENERGY; FORCE-FIELD; BASIS-SETS; SOLVATION; DESIGN;
D O I
10.1039/d4cp01982b
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The pK(a) value of a molecule is of interest to chemists across a broad spectrum of fields including pharmacology, environmental chemistry and theoretical chemistry. Determination of pK(a) values can be accomplished through several experimental methods such as NMR techniques and titration together with computational techniques such as DFT calculations. However, all of these methods remain time consuming and computationally expensive. In this work we develop a method for the rapid calculation of pK(a) values of small molecules which utilises a combination of neural network potentials, low energy conformer searches and thermodynamic cycles. We show that neural network potentials trained on different phase and charge states can be employed in tandem to predict the full thermodynamic energy cycle of molecules. Focusing here on imidazolium derived carbene species, the method utilised can easily be extended to other functional groups of interest such as amines with further training.
引用
收藏
页码:23934 / 23943
页数:10
相关论文
共 50 条
  • [41] Neural Network Potentials: A Concise Overview of Methods
    Kocer, Emir
    Ko, Tsz Wai
    Behler, Joerg
    ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2022, 73 : 163 - 186
  • [42] Representations in neural network based empirical potentials
    Cubuk, Ekin D.
    Malone, Brad D.
    Onat, Berk
    Waterland, Amos
    Kaxiras, Efthimios
    JOURNAL OF CHEMICAL PHYSICS, 2017, 147 (02):
  • [43] Spectral neural network potentials for binary alloys
    Zagaceta, David
    Yanxon, Howard
    Zhu, Qiang
    JOURNAL OF APPLIED PHYSICS, 2020, 128 (04)
  • [44] Computational prediction of small-molecule catalysts
    K. N. Houk
    Paul Ha-Yeon Cheong
    Nature, 2008, 455 : 309 - 313
  • [45] Computational prediction of small-molecule catalysts
    Houk, K. N.
    Cheong, Paul Ha-Yeon
    NATURE, 2008, 455 (7211) : 309 - 313
  • [46] Machine learning methods for pKa prediction of small molecules: Advances and challenges
    Wu, Jialu
    Kang, Yu
    Pan, Peichen
    Hou, Tingjun
    DRUG DISCOVERY TODAY, 2022, 27 (12)
  • [47] Prediction of stable Li-Sn compounds: boosting ab initio searches with neural network potentials
    Saba Kharabadze
    Aidan Thorn
    Ekaterina A. Koulakova
    Aleksey N. Kolmogorov
    npj Computational Materials, 8
  • [48] Prediction of stable Li-Sn compounds: boosting ab initio searches with neural network potentials
    Kharabadze, Saba
    Thorn, Aidan
    Koulakova, Ekaterina A.
    Kolmogorov, Aleksey N.
    NPJ COMPUTATIONAL MATERIALS, 2022, 8 (01)
  • [49] PREDICTION OF ATOMIC IONIZATION-POTENTIALS I-III USING AN ARTIFICIAL NEURAL-NETWORK
    SIGMAN, ME
    RIVES, SS
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1994, 34 (03): : 617 - 620
  • [50] High-Dimensional Neural Network Potentials for Accurate Prediction of Equation of State: A Case Study of Methane
    Abedi, Mostafa
    Behler, Joerg
    Goldsmith, C. Franklin
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (21) : 7825 - 7832