Droplet microfluidics for time-resolved serial crystallography

被引:1
|
作者
Stubbs, Jack [1 ,2 ]
Hornsey, Theo [1 ]
Hanrahan, Niall [3 ,4 ]
Esteban, Luis Blay [5 ]
Bolton, Rachel [1 ,2 ]
Maly, Martin [1 ,4 ]
Basu, Shibom [6 ]
Orlans, Julien [7 ]
De Sanctis, Daniele [7 ]
Shim, Jung-Uk [8 ]
Stewart, Patrick D. Shaw [9 ]
Orville, Allen M. [2 ,10 ]
Tews, Ivo [1 ,4 ]
West, Jonathan [4 ,11 ]
机构
[1] Univ Southampton, Sch Biol Sci, Fac Environm & Life Sci, Southampton SO17 1BJ, England
[2] Harwell Sci & Innovat Campus, Diamond Light Source, Didcot, Oxon, England
[3] Univ South ampton, Sch Chem, Fac Engn & Phys Sci, Southampton SO17 1BJ, England
[4] Univ Southampton, Inst Life Sci, Southampton SO17 1BJ, England
[5] Univ Carlemany, Avenida Verge De Canolich 47,, Principat Dandorra AD600, Spain
[6] European Mol Biol Lab, Grenoble Outstat,71 Ave Martyrs, F-38042 Grenoble 9, CS 90181, France
[7] European Synchrotron Radiat Facil ESRF, 71 Ave Martyrs, F-38042 Grenoble 9, France
[8] Univ Leeds, Fac Engn & Phys Sci, Leeds LS2 9JT, England
[9] Douglas Instruments Ltd, Hungerford RG17 7HD, England
[10] Harwell Sci & Innovat Campus, Res Complex Harwell, Didcot OX11 0FA, Oxon, England
[11] Univ Southampton, Canc Sci, Fac Med, Southampton SO17 1BJ, England
来源
IUCRJ | 2024年 / 11卷
基金
英国惠康基金; 英国生物技术与生命科学研究理事会; 英国工程与自然科学研究理事会; 英国科学技术设施理事会;
关键词
droplet microfluidics; crystal miniaturization; micromixing; time-resolved serial crystallography; MACROMOLECULAR CRYSTALLOGRAPHY; PROTEIN CRYSTALLIZATION; ROOM-TEMPERATURE; ON-DEMAND; CHIP; INTERMEDIATE; NUCLEATION; INTERFACE; GROWTH;
D O I
10.1107/S2052252524001799
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Serial crystallography requires large numbers of microcrystals and robust strategies to rapidly apply substrates to initiate reactions in time-resolved studies. Here, we report the use of droplet miniaturization for the controlled production of uniform crystals, providing an avenue for controlled substrate addition and synchronous reaction initiation. The approach was evaluated using two enzymatic systems, yielding 3 mu m crystals of lysozyme and 2 mu m crystals of Pdx1, an Arabidopsis enzyme involved in vitamin B6 biosynthesis. A seeding strategy was used to overcome the improbability of Pdx1 nucleation occurring with diminishing droplet volumes. Convection within droplets was exploited for rapid crystal mixing with ligands. Mixing times of <2 ms were achieved. Droplet microfluidics for crystal size engineering and rapid micromixing can be utilized to advance time-resolved serial crystallography.
引用
收藏
页码:237 / 248
页数:12
相关论文
共 50 条
  • [1] Microfluidics: From crystallization to serial time-resolved crystallography
    Sui, Shuo
    Perry, Sarah L.
    [J]. STRUCTURAL DYNAMICS-US, 2017, 4 (03):
  • [2] A microfluidics-based approach for serial time-resolved crystallography
    Mahon, Brian P.
    Cho, Hyun Sun
    Schotte, Friedrich
    Anfinrud, Philip A.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2017, 73 : A229 - A229
  • [3] Time-resolved serial femtosecond crystallography at the European XFEL
    Pandey, Suraj
    Bean, Richard
    Sato, Tokushi
    Poudyal, Ishwor
    Bielecki, Johan
    Cruz Villarreal, Jorvani
    Yefanov, Oleksandr
    Mariani, Valerio
    White, Thomas A.
    Kupitz, Christopher
    Hunter, Mark
    Abdellatif, Mohamed H.
    Bajt, Sasa
    Bondar, Valerii
    Echelmeier, Austin
    Doppler, Diandra
    Emons, Moritz
    Frank, Matthias
    Fromme, Raimund
    Gevorkov, Yaroslav
    Giovanetti, Gabriele
    Jiang, Man
    Kim, Daihyun
    Kim, Yoonhee
    Kirkwood, Henry
    Klimovskaia, Anna
    Knoska, Juraj
    Koua, Faisal H. M.
    Letrun, Romain
    Lisova, Stella
    Maia, Luis
    Mazalova, Victoria
    Meza, Domingo
    Michelat, Thomas
    Ourmazd, Abbas
    Palmer, Guido
    Ramilli, Marco
    Schubert, Robin
    Schwander, Peter
    Silenzi, Alessandro
    Sztuk-Dambietz, Jolanta
    Tolstikova, Alexandra
    Chapman, Henry N.
    Ros, Alexandra
    Barty, Anton
    Fromme, Petra
    Mancuso, Adrian P.
    Schmidt, Marius
    [J]. NATURE METHODS, 2020, 17 (01) : 73 - +
  • [4] Sample preparation and delivery for serial and time-resolved crystallography
    Oberthuer, Dominik
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2015, 71 : S147 - S147
  • [5] Towards time-resolved serial crystallography in a microfluidic device
    Pawate, Ashtamurthy S.
    Srajer, Vukica
    Schieferstein, Jeremy
    Guha, Sudipto
    Henning, Robert
    Kosheleva, Irina
    Schmidt, Marius
    Ren, Zhong
    Kenis, Paul J. A.
    Perry, Sarah L.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 : 823 - 830
  • [6] Best practices for time-resolved serial synchrotron crystallography
    Schulz, Eike C.
    Yorke, Briony A.
    Pearson, Arwen R.
    Mehrabi, Pedram
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2022, 78 : 14 - 29
  • [7] Time-resolved serial femtosecond crystallography at the European XFEL
    Suraj Pandey
    Richard Bean
    Tokushi Sato
    Ishwor Poudyal
    Johan Bielecki
    Jorvani Cruz Villarreal
    Oleksandr Yefanov
    Valerio Mariani
    Thomas A. White
    Christopher Kupitz
    Mark Hunter
    Mohamed H. Abdellatif
    Saša Bajt
    Valerii Bondar
    Austin Echelmeier
    Diandra Doppler
    Moritz Emons
    Matthias Frank
    Raimund Fromme
    Yaroslav Gevorkov
    Gabriele Giovanetti
    Man Jiang
    Daihyun Kim
    Yoonhee Kim
    Henry Kirkwood
    Anna Klimovskaia
    Juraj Knoska
    Faisal H. M. Koua
    Romain Letrun
    Stella Lisova
    Luis Maia
    Victoria Mazalova
    Domingo Meza
    Thomas Michelat
    Abbas Ourmazd
    Guido Palmer
    Marco Ramilli
    Robin Schubert
    Peter Schwander
    Alessandro Silenzi
    Jolanta Sztuk-Dambietz
    Alexandra Tolstikova
    Henry N. Chapman
    Alexandra Ros
    Anton Barty
    Petra Fromme
    Adrian P. Mancuso
    Marius Schmidt
    [J]. Nature Methods, 2020, 17 : 73 - 78
  • [8] Serial synchrotron crystallography for time-resolved structural biology
    Pearson, Arwen R.
    Mehrabi, Pedram
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2020, 65 : 168 - 174
  • [9] Time-resolved serial synchrotron crystallography for the functional characterization of proteins
    Mehrabi, P.
    Schulz, E.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2022, 78 : E108 - E108
  • [10] Time-Resolved Serial Femtosecond Crystallography On Photoswitchable Fluorescent Proteins
    Weik, Martin
    Coquelle, Nicolas
    Sliwa, Michel
    Woodhouse, Joyce
    Schiro, Giorgio
    Adam, Virgile
    Aquila, Andrew
    Barends, Thomas
    Boutet, Sebastien
    Byrdin, Martin
    Doak, Bruce
    Feliks, Mikolaj
    Fieschi, Franck
    Foucar, Lutz
    Guillon, Virginia
    Hilpert, Mario
    Hunter, Mark
    Jakobs, Stefan
    Koglin, Jason
    Kovacsova, Gabriela
    Levy, Bernard
    Liang Mengning
    Nass, Karol
    Ridard, Jacqueline
    Robinson, Joseph
    Roome, Christopher
    Ruckebusch, Cyril
    Thepaut, Michel
    Cammarata, Marco
    Demachy, Isabelle
    Field, Martin
    Shoeman, Robert
    Bourgeois, Dominique
    Colletier, Jacques-Philippe
    Schlichting, Ilme
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2016, 72 : S39 - S39