Time-resolved serial femtosecond crystallography at the European XFEL

被引:107
|
作者
Pandey, Suraj [1 ]
Bean, Richard [2 ]
Sato, Tokushi [2 ]
Poudyal, Ishwor [1 ]
Bielecki, Johan [2 ]
Cruz Villarreal, Jorvani [3 ,4 ]
Yefanov, Oleksandr [5 ]
Mariani, Valerio [5 ]
White, Thomas A. [5 ]
Kupitz, Christopher [6 ]
Hunter, Mark [6 ]
Abdellatif, Mohamed H. [5 ]
Bajt, Sasa [7 ]
Bondar, Valerii [2 ]
Echelmeier, Austin [3 ,4 ]
Doppler, Diandra [3 ,4 ]
Emons, Moritz [2 ]
Frank, Matthias [8 ]
Fromme, Raimund [3 ,4 ]
Gevorkov, Yaroslav [5 ,9 ]
Giovanetti, Gabriele [2 ]
Jiang, Man [2 ]
Kim, Daihyun [3 ,4 ]
Kim, Yoonhee [2 ]
Kirkwood, Henry [2 ]
Klimovskaia, Anna [2 ]
Knoska, Juraj [5 ,10 ]
Koua, Faisal H. M. [5 ]
Letrun, Romain [2 ]
Lisova, Stella [11 ]
Maia, Luis [2 ]
Mazalova, Victoria [5 ]
Meza, Domingo [12 ]
Michelat, Thomas [2 ]
Ourmazd, Abbas [1 ]
Palmer, Guido [2 ]
Ramilli, Marco [2 ]
Schubert, Robin [12 ]
Schwander, Peter [1 ]
Silenzi, Alessandro [2 ]
Sztuk-Dambietz, Jolanta [2 ]
Tolstikova, Alexandra [5 ]
Chapman, Henry N. [5 ,10 ,13 ]
Ros, Alexandra [3 ,4 ]
Barty, Anton [5 ]
Fromme, Petra [3 ,4 ]
Mancuso, Adrian P. [2 ,14 ]
Schmidt, Marius [1 ]
机构
[1] Univ Wisconsin, Dept Phys, Milwaukee, WI 53211 USA
[2] European XFEL GmbH, Schenefeld, Germany
[3] Arizona State Univ, Sch Mol Sci, Tempe, AZ USA
[4] Arizona State Univ, Biodesign Inst, Ctr Appl Struct Discovery, Tempe, AZ USA
[5] DESY, Ctr Free Electron Laser Sci, Hamburg, Germany
[6] Stanford Linear Accelerator Ctr, Natl Accelerator Lab, Linac Coherent Light Source, Menlo Pk, CA USA
[7] DESY, Hamburg, Germany
[8] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA
[9] Hamburg Univ Technol, Inst Vis Syst, Hamburg, Germany
[10] Univ Hamburg, Hamburg, Germany
[11] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[12] European XFEL, Integrated Biol Infrastruct Life Sci Facil, Schenefeld, Germany
[13] Ctr Ultrafast Imaging, Hamburg, Germany
[14] La Trobe Univ, La Trobe Inst Mol Sci, Dept Chem & Phys, Melbourne, Vic, Australia
基金
欧洲研究理事会; 美国国家科学基金会; 美国国家卫生研究院;
关键词
PHOTOACTIVE YELLOW PROTEIN; TRANS-CIS ISOMERIZATION; CRYSTAL-STRUCTURE; PHOTOCYCLE; CHROMOPHORE; DYNAMICS; NANOSECONDS; POPULATIONS; PATHWAYS; DETECTOR;
D O I
10.1038/s41592-019-0628-z
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The European XFEL (EuXFEL) is a 3.4-km long X-ray source, which produces femtosecond, ultrabrilliant and spatially coherent X-ray pulses at megahertz (MHz) repetition rates. This X-ray source has been designed to enable the observation of ultrafast processes with near-atomic spatial resolution. Time-resolved crystallographic investigations on biological macromolecules belong to an important class of experiments that explore fundamental and functional structural displacements in these molecules. Due to the unusual MHz X-ray pulse structure at the EuXFEL, these experiments are challenging. Here, we demonstrate how a biological reaction can be followed on ultrafast timescales at the EuXFEL. We investigate the picosecond time range in the photocycle of photoactive yellow protein (PYP) with MHz X-ray pulse rates. We show that difference electron density maps of excellent quality can be obtained. The results connect the previously explored femtosecond PYP dynamics to timescales accessible at synchrotrons. This opens the door to a wide range of time-resolved studies at the EuXFEL. European XFEL allows investigation of the picosecond time range in the photocycle of photoactive yellow protein.
引用
收藏
页码:73 / +
页数:9
相关论文
共 50 条
  • [1] Time-resolved serial femtosecond crystallography at the European XFEL
    Suraj Pandey
    Richard Bean
    Tokushi Sato
    Ishwor Poudyal
    Johan Bielecki
    Jorvani Cruz Villarreal
    Oleksandr Yefanov
    Valerio Mariani
    Thomas A. White
    Christopher Kupitz
    Mark Hunter
    Mohamed H. Abdellatif
    Saša Bajt
    Valerii Bondar
    Austin Echelmeier
    Diandra Doppler
    Moritz Emons
    Matthias Frank
    Raimund Fromme
    Yaroslav Gevorkov
    Gabriele Giovanetti
    Man Jiang
    Daihyun Kim
    Yoonhee Kim
    Henry Kirkwood
    Anna Klimovskaia
    Juraj Knoska
    Faisal H. M. Koua
    Romain Letrun
    Stella Lisova
    Luis Maia
    Victoria Mazalova
    Domingo Meza
    Thomas Michelat
    Abbas Ourmazd
    Guido Palmer
    Marco Ramilli
    Robin Schubert
    Peter Schwander
    Alessandro Silenzi
    Jolanta Sztuk-Dambietz
    Alexandra Tolstikova
    Henry N. Chapman
    Alexandra Ros
    Anton Barty
    Petra Fromme
    Adrian P. Mancuso
    Marius Schmidt
    [J]. Nature Methods, 2020, 17 : 73 - 78
  • [2] Potential of Time-Resolved Serial Femtosecond Crystallography Using High Repetition Rate XFEL Sources
    de Wijn, Raphael
    Melo, Diogo V. M.
    Koua, Faisal H. M.
    Mancuso, Adrian P.
    [J]. APPLIED SCIENCES-BASEL, 2022, 12 (05):
  • [3] Time-Resolved Serial Femtosecond Crystallography On Photoswitchable Fluorescent Proteins
    Weik, Martin
    Coquelle, Nicolas
    Sliwa, Michel
    Woodhouse, Joyce
    Schiro, Giorgio
    Adam, Virgile
    Aquila, Andrew
    Barends, Thomas
    Boutet, Sebastien
    Byrdin, Martin
    Doak, Bruce
    Feliks, Mikolaj
    Fieschi, Franck
    Foucar, Lutz
    Guillon, Virginia
    Hilpert, Mario
    Hunter, Mark
    Jakobs, Stefan
    Koglin, Jason
    Kovacsova, Gabriela
    Levy, Bernard
    Liang Mengning
    Nass, Karol
    Ridard, Jacqueline
    Robinson, Joseph
    Roome, Christopher
    Ruckebusch, Cyril
    Thepaut, Michel
    Cammarata, Marco
    Demachy, Isabelle
    Field, Martin
    Shoeman, Robert
    Bourgeois, Dominique
    Colletier, Jacques-Philippe
    Schlichting, Ilme
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2016, 72 : S39 - S39
  • [4] Time-resolved serial femtosecond crystallography on photoswitchable fluorescent proteins
    Hadjidemetriou, K.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2021, 77 : C251 - C251
  • [5] Protein crystallization and characterization for serial femtosecond crystallography at the European XFEL
    Han, H.
    Brings, L.
    Chretien, A.
    De Diego, I.
    Round, E.
    Schmidt, C.
    Schubert, R.
    Schulz, J.
    Lorenzen, K.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2022, 78 : E799 - E799
  • [6] AGIPD detector for Serial Femtosecond Crystallography Apparatus at European XFEL
    Stern, S.
    Chavas, L.
    Chapman, H.
    Mancuso, A.
    Aquila, A.
    Giewekemeyer, K.
    Becker, J.
    Graafsma, H.
    Schmitt, B.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2014, 70 : C694 - C694
  • [7] Recent chemical mixing devices for time-resolved serial femtosecond crystallography
    Park, Jaehyun
    Nam, Ki Hyun
    [J]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2024, 172
  • [8] Serial Femtosecond Crystallography user's consortium apparatus at European XFEL
    Messerschmidt, M.
    Chavas, L.
    Ananthaneni, S.
    Dadgostar, H.
    Graafsma, H.
    Liang, M.
    Mancuso, A.
    Raabe, S.
    Stern, S.
    Vagovic, P.
    Chapman, H.
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2014, 70 : C1748 - C1748
  • [9] Time-resolved serial femtosecond crystallography for investigating structural dynamics of chemical systems
    Moon, Jungho
    Lee, Yunbeom
    Ihee, Hyotcherl
    [J]. CHEMICAL COMMUNICATIONS, 2024, 60 (71) : 9472 - 9482
  • [10] Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin
    Oda, Kazumasa
    Nomura, Takashi
    Nakane, Takanori
    Yamashita, Keitaro
    Inoue, Keiichi
    Ito, Shota
    Vierock, Johannes
    Hirata, Kunio
    Maturana, Andres D.
    Katayama, Kota
    Ikuta, Tatsuya
    Ishigami, Itsuki
    Izume, Tamaki
    Umeda, Rie
    Eguma, Ryuun
    Oishi, Satomi
    Kasuya, Go
    Kato, Takafumi
    Kusakizako, Tsukasa
    Shihoya, Wataru
    Shimada, Hiroto
    Takatsuji, Tomoyuki
    Takemoto, Mizuki
    Taniguchi, Reiya
    Tomita, Atsuhiro
    Nakamura, Ryoki
    Fukuda, Masahiro
    Miyauchi, Hirotake
    Lee, Yongchan
    Nango, Eriko
    Tanaka, Rie
    Tanaka, Tomoyuki
    Sugahara, Michihiro
    Kimura, Tetsunari
    Shimamura, Tatsuro
    Fujiwara, Takaaki
    Yamanaka, Yasuaki
    Owada, Shigeki
    Joti, Yasumasa
    Tono, Kensuke
    Ishitani, Ryuichiro
    Hayashi, Shigehiko
    Kandori, Hideki
    Hegemann, Peter
    Iwata, So
    Kubo, Minoru
    Nishizawa, Tomohiro
    Nureki, Osamu
    [J]. ELIFE, 2021, 10