Time-resolved serial femtosecond crystallography at the European XFEL

被引:107
|
作者
Pandey, Suraj [1 ]
Bean, Richard [2 ]
Sato, Tokushi [2 ]
Poudyal, Ishwor [1 ]
Bielecki, Johan [2 ]
Cruz Villarreal, Jorvani [3 ,4 ]
Yefanov, Oleksandr [5 ]
Mariani, Valerio [5 ]
White, Thomas A. [5 ]
Kupitz, Christopher [6 ]
Hunter, Mark [6 ]
Abdellatif, Mohamed H. [5 ]
Bajt, Sasa [7 ]
Bondar, Valerii [2 ]
Echelmeier, Austin [3 ,4 ]
Doppler, Diandra [3 ,4 ]
Emons, Moritz [2 ]
Frank, Matthias [8 ]
Fromme, Raimund [3 ,4 ]
Gevorkov, Yaroslav [5 ,9 ]
Giovanetti, Gabriele [2 ]
Jiang, Man [2 ]
Kim, Daihyun [3 ,4 ]
Kim, Yoonhee [2 ]
Kirkwood, Henry [2 ]
Klimovskaia, Anna [2 ]
Knoska, Juraj [5 ,10 ]
Koua, Faisal H. M. [5 ]
Letrun, Romain [2 ]
Lisova, Stella [11 ]
Maia, Luis [2 ]
Mazalova, Victoria [5 ]
Meza, Domingo [12 ]
Michelat, Thomas [2 ]
Ourmazd, Abbas [1 ]
Palmer, Guido [2 ]
Ramilli, Marco [2 ]
Schubert, Robin [12 ]
Schwander, Peter [1 ]
Silenzi, Alessandro [2 ]
Sztuk-Dambietz, Jolanta [2 ]
Tolstikova, Alexandra [5 ]
Chapman, Henry N. [5 ,10 ,13 ]
Ros, Alexandra [3 ,4 ]
Barty, Anton [5 ]
Fromme, Petra [3 ,4 ]
Mancuso, Adrian P. [2 ,14 ]
Schmidt, Marius [1 ]
机构
[1] Univ Wisconsin, Dept Phys, Milwaukee, WI 53211 USA
[2] European XFEL GmbH, Schenefeld, Germany
[3] Arizona State Univ, Sch Mol Sci, Tempe, AZ USA
[4] Arizona State Univ, Biodesign Inst, Ctr Appl Struct Discovery, Tempe, AZ USA
[5] DESY, Ctr Free Electron Laser Sci, Hamburg, Germany
[6] Stanford Linear Accelerator Ctr, Natl Accelerator Lab, Linac Coherent Light Source, Menlo Pk, CA USA
[7] DESY, Hamburg, Germany
[8] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA
[9] Hamburg Univ Technol, Inst Vis Syst, Hamburg, Germany
[10] Univ Hamburg, Hamburg, Germany
[11] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[12] European XFEL, Integrated Biol Infrastruct Life Sci Facil, Schenefeld, Germany
[13] Ctr Ultrafast Imaging, Hamburg, Germany
[14] La Trobe Univ, La Trobe Inst Mol Sci, Dept Chem & Phys, Melbourne, Vic, Australia
基金
美国国家卫生研究院; 美国国家科学基金会; 欧洲研究理事会;
关键词
PHOTOACTIVE YELLOW PROTEIN; TRANS-CIS ISOMERIZATION; CRYSTAL-STRUCTURE; PHOTOCYCLE; CHROMOPHORE; DYNAMICS; NANOSECONDS; POPULATIONS; PATHWAYS; DETECTOR;
D O I
10.1038/s41592-019-0628-z
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The European XFEL (EuXFEL) is a 3.4-km long X-ray source, which produces femtosecond, ultrabrilliant and spatially coherent X-ray pulses at megahertz (MHz) repetition rates. This X-ray source has been designed to enable the observation of ultrafast processes with near-atomic spatial resolution. Time-resolved crystallographic investigations on biological macromolecules belong to an important class of experiments that explore fundamental and functional structural displacements in these molecules. Due to the unusual MHz X-ray pulse structure at the EuXFEL, these experiments are challenging. Here, we demonstrate how a biological reaction can be followed on ultrafast timescales at the EuXFEL. We investigate the picosecond time range in the photocycle of photoactive yellow protein (PYP) with MHz X-ray pulse rates. We show that difference electron density maps of excellent quality can be obtained. The results connect the previously explored femtosecond PYP dynamics to timescales accessible at synchrotrons. This opens the door to a wide range of time-resolved studies at the EuXFEL. European XFEL allows investigation of the picosecond time range in the photocycle of photoactive yellow protein.
引用
下载
收藏
页码:73 / +
页数:9
相关论文
共 50 条
  • [21] EXtra-Xwiz: A Tool to Streamline Serial Femtosecond Crystallography Workflows at European XFEL
    Turkot, Oleksii
    Dall'Antonia, Fabio
    Bean, Richard J.
    E, Juncheng
    Fangohr, Hans
    de Lima, Danilo E. Ferreira
    Kantamneni, Sravya
    Kirkwood, Henry J.
    Koua, Faisal H. M.
    Mancuso, Adrian P.
    Melo, Diogo V. M.
    Round, Adam
    Schuh, Michael
    Sobolev, Egor
    de Wijn, Raphael
    Wrigley, James J.
    Gelisio, Luca
    CRYSTALS, 2023, 13 (11)
  • [22] MEGAHERTZ RATE SERIAL CRYSTALLOGRAPHY AT THE EUROPEAN XFEL
    Letrun, Romain
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2019, 75 : E726 - E726
  • [23] Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser
    Christopher Kupitz
    Shibom Basu
    Ingo Grotjohann
    Raimund Fromme
    Nadia A. Zatsepin
    Kimberly N. Rendek
    Mark S. Hunter
    Robert L. Shoeman
    Thomas A. White
    Dingjie Wang
    Daniel James
    Jay-How Yang
    Danielle E. Cobb
    Brenda Reeder
    Raymond G. Sierra
    Haiguang Liu
    Anton Barty
    Andrew L. Aquila
    Daniel Deponte
    Richard A. Kirian
    Sadia Bari
    Jesse J. Bergkamp
    Kenneth R. Beyerlein
    Michael J. Bogan
    Carl Caleman
    Tzu-Chiao Chao
    Chelsie E. Conrad
    Katherine M. Davis
    Holger Fleckenstein
    Lorenzo Galli
    Stefan P. Hau-Riege
    Stephan Kassemeyer
    Hartawan Laksmono
    Mengning Liang
    Lukas Lomb
    Stefano Marchesini
    Andrew V. Martin
    Marc Messerschmidt
    Despina Milathianaki
    Karol Nass
    Alexandra Ros
    Shatabdi Roy-Chowdhury
    Kevin Schmidt
    Marvin Seibert
    Jan Steinbrener
    Francesco Stellato
    Lifen Yan
    Chunhong Yoon
    Thomas A. Moore
    Ana L. Moore
    Nature, 2014, 513 : 261 - 265
  • [24] Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser
    Kupitz, Christopher
    Basu, Shibom
    Grotjohann, Ingo
    Fromme, Raimund
    Zatsepin, Nadia A.
    Rendek, Kimberly N.
    Hunter, Mark S.
    Shoeman, Robert L.
    White, Thomas A.
    Wang, Dingjie
    James, Daniel
    Yang, Jay-How
    Cobb, Danielle E.
    Reeder, Brenda
    Sierra, Raymond G.
    Liu, Haiguang
    Barty, Anton
    Aquila, Andrew L.
    Deponte, Daniel
    Kirian, Richard A.
    Bari, Sadia
    Bergkamp, Jesse J.
    Beyerlein, Kenneth R.
    Bogan, Michael J.
    Caleman, Carl
    Chao, Tzu-Chiao
    Conrad, Chelsie E.
    Davis, Katherine M.
    Fleckenstein, Holger
    Galli, Lorenzo
    Hau-Riege, Stefan P.
    Kassemeyer, Stephan
    Laksmono, Hartawan
    Liang, Mengning
    Lomb, Lukas
    Marchesini, Stefano
    Martin, Andrew V.
    Messerschmidt, Marc
    Milathianaki, Despina
    Nass, Karol
    Ros, Alexandra
    Roy-Chowdhury, Shatabdi
    Schmidt, Kevin
    Seibert, Marvin
    Steinbrener, Jan
    Stellato, Francesco
    Yan, Lifen
    Yoon, Chunhong
    Moore, Thomas A.
    Moore, Ana L.
    NATURE, 2014, 513 (7517) : 261 - +
  • [25] Towards time-resolved serial crystallography in a microfluidic device
    Pawate, Ashtamurthy S.
    Srajer, Vukica
    Schieferstein, Jeremy
    Guha, Sudipto
    Henning, Robert
    Kosheleva, Irina
    Schmidt, Marius
    Ren, Zhong
    Kenis, Paul J. A.
    Perry, Sarah L.
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 : 823 - 830
  • [26] Sample preparation and delivery for serial and time-resolved crystallography
    Oberthuer, Dominik
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2015, 71 : S147 - S147
  • [27] Microfluidics: From crystallization to serial time-resolved crystallography
    Sui, Shuo
    Perry, Sarah L.
    STRUCTURAL DYNAMICS-US, 2017, 4 (03):
  • [28] Best practices for time-resolved serial synchrotron crystallography
    Schulz, Eike C.
    Yorke, Briony A.
    Pearson, Arwen R.
    Mehrabi, Pedram
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2022, 78 : 14 - 29
  • [29] Nanosecond pump-probe device for time-resolved serial femtosecond crystallography developed at SACLA
    Kubo, Minoru
    Nango, Eriko
    Tono, Kensuke
    Kimura, Tetsunari
    Owada, Shigeki
    Song, Changyong
    Mafune, Fumitaka
    Miyajima, Ken
    Takeda, Yoshihiro
    Kohno, Jun-ya
    Miyauchi, Naoya
    Nakane, Takanori
    Tanaka, Tomoyuki
    Nomura, Takashi
    Davidsson, Jan
    Tanaka, Rie
    Murata, Michio
    Kameshima, Takashi
    Hatsui, Takaki
    Joti, Yasumasa
    Neutze, Richard
    Yabashi, Makina
    Iwata, So
    JOURNAL OF SYNCHROTRON RADIATION, 2017, 24 : 1086 - 1091
  • [30] Detection of a Geminate Photoproduct of Bovine Cytochrome c Oxidase by Time-Resolved Serial Femtosecond Crystallography
    Ishigami, Izumi
    Carbajo, Sergio
    Zatsepin, Nadia
    Hikita, Masahide
    Conrad, Chelsie E.
    Nelson, Garrett
    Coe, Jesse
    Basu, Shibom
    Grant, Thomas
    Seaberg, Matthew H.
    Sierra, Raymond G.
    Hunter, Mark S.
    Fromme, Petra
    Fromme, Raimund
    Rousseau, Denis L.
    Yeh, Syun-Ru
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2023, 145 (41) : 22305 - 22309