EFFICIENT ALGORITHMS FOR INFERRING EVOLUTIONARY TREES

被引:250
|
作者
GUSFIELD, D
机构
[1] Computer Science Division, University of California, Davis, California
关键词
D O I
10.1002/net.3230210104
中图分类号
TP3 [计算技术、计算机技术];
学科分类号
0812 ;
摘要
In this paper, we examine two related problems of inferring the evolutionary history of n objects, either from present characters of the objects or from several partial estimates of their evolutionary history. The first problem is called the Phylogeny problem, and second is the Tree Compatibility problem. Both of these problems are central in algorithmic approaches to the study of evolution and in other problems of historical reconstruction. In this paper, we show that both of these problems can be solved by graph theoretic methods in linear time, which is time optimal, and which is a significant improvement over existing methods.
引用
下载
收藏
页码:19 / 28
页数:10
相关论文
共 50 条
  • [21] Efficient analysis algorithms for parametric Fault Trees
    Bobbio, A
    Codetta-Raiteri, D
    De Pierro, MA
    Franceschinis, G
    2005 WORKSHOP ON TECHNIQUES, METHODOLOGIES AND TOOLS FOR PERFORMANCE EVALUATION OF COMPLEX SYSTEMS, PROCEEDINGS, 2005, : 91 - +
  • [22] Efficient algorithms for wavelength assignment on trees of rings
    Bian, Zhengbing
    Gu, Qian-Ping
    Zhou, Xiao
    DISCRETE APPLIED MATHEMATICS, 2009, 157 (05) : 875 - 889
  • [23] EFFICIENT ALGORITHMS AND PARTIAL KAPPA-TREES
    不详
    DISCRETE APPLIED MATHEMATICS, 1994, 54 (2-3) : 97 - 99
  • [24] Efficient algorithms for descendent subtrees comparison of phylogenetic trees with applications to co-evolutionary classifications in bacterial genome
    Lin, YL
    Hsu, TS
    ALGORITHMS AND COMPUTATION, PROCEEDINGS, 2003, 2906 : 339 - 351
  • [25] Inferring descriptive and approximate fuzzy rules for credit scoring using evolutionary algorithms
    Hoffmann, F.
    Baesens, B.
    Mues, C.
    Van Gestel, T.
    Vanthienen, J.
    EUROPEAN JOURNAL OF OPERATIONAL RESEARCH, 2007, 177 (01) : 540 - 555
  • [26] Missing the forest for the trees:: Phylogenetic compression and its implications for inferring complex evolutionary histories
    Ané, C
    Sanderson, MJ
    SYSTEMATIC BIOLOGY, 2005, 54 (01) : 146 - 157
  • [27] LEAC: An efficient library for clustering with evolutionary algorithms
    Robles-Berumen, Hermes
    Zafra, Amelia
    Fardoun, Habib M.
    Ventura, Sebastian
    KNOWLEDGE-BASED SYSTEMS, 2019, 179 : 117 - 119
  • [28] An Efficient Way of Introducing Gender Into Evolutionary Algorithms
    Kasten, Christian
    Fahr, Julian
    Klein, Markus
    IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2023, 27 (04) : 1005 - 1014
  • [29] Efficient learning of neural networks with evolutionary algorithms
    Siebel, Nils T.
    Krause, Jochen
    Sommer, Gerald
    PATTERN RECOGNITION, PROCEEDINGS, 2007, 4713 : 466 - +
  • [30] Efficient Evolutionary Algorithms for GPS Satellites Classification
    Mosavi, M. R.
    Shiroie, M.
    ARABIAN JOURNAL FOR SCIENCE AND ENGINEERING, 2012, 37 (07) : 2003 - 2015