PREDICTION OF TRANSMEMBRANE SEGMENTS IN PROTEINS UTILIZING MULTIPLE SEQUENCE ALIGNMENTS

被引:414
|
作者
PERSSON, B [1 ]
ARGOS, P [1 ]
机构
[1] KAROLINSKA INST,DEPT MED BIOCHEM & BIOPHYS,S-17177 STOCKHOLM,SWEDEN
关键词
PROTEIN STRUCTURE PREDICTION; MEMBRANE PROTEINS; TRANSMEMBRANE HELICES; MULTIPLE ALIGNMENT;
D O I
10.1006/jmbi.1994.1220
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:182 / 192
页数:11
相关论文
共 50 条
  • [31] Assessing the Discordance of Multiple Sequence Alignments
    Prakash, Amol
    Tompa, Martin
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2009, 6 (04) : 542 - 551
  • [32] Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
    Jia-Ming Chang
    Paolo Di Tommaso
    Jean-François Taly
    Cedric Notredame
    BMC Bioinformatics, 13
  • [33] Perspective: peptides as mimics of transmembrane segments in proteins
    Deber, CM
    Liu, LP
    Wang, C
    JOURNAL OF PEPTIDE RESEARCH, 1999, 54 (03): : 200 - 205
  • [34] Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
    Chang, Jia-Ming
    Di Tommaso, Paolo
    Taly, Jean-Francois
    Notredame, Cedric
    BMC BIOINFORMATICS, 2012, 13
  • [35] TM-MSAligner: A Tool for Multiple Sequence Alignment of Transmembrane Proteins
    Cedeno-Munoz, Joel
    Zambrano-Vega, Cristian
    Nebro, Antonio J.
    COMPUTATIONAL SCIENCE, ICCS 2024, PT IV, 2024, 14835 : 113 - 121
  • [36] Evaluation measures of multiple sequence alignments
    Gonnet, GH
    Korostensky, C
    Benner, S
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (1-2) : 261 - 276
  • [37] Evolving better multiple sequence alignments
    Sheneman, L
    Foster, JA
    GENETIC AND EVOLUTIONARY COMPUTATION - GECCO 2004, PT 1, PROCEEDINGS, 2004, 3102 : 449 - 460
  • [38] Parallel computation for multiple sequence alignments
    Du, ZH
    Lin, F
    ICICS-PCM 2003, VOLS 1-3, PROCEEDINGS, 2003, : 300 - 303
  • [39] PSI/TM-Coffee: a web server for fast and accurate multiple sequence alignments of regular and transmembrane proteins using homology extension on reduced databases
    Floden, Evan W.
    Tommaso, Paolo D.
    Chatzou, Maria
    Magis, Cedrik
    Notredame, Cedric
    Chang, Jia-Ming
    NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) : W339 - W343
  • [40] Improving prediction of hydrophobic segments along a transmembrane protein sequence using adaptive multiscale lifting
    Knight, MI
    Nason, GP
    MULTISCALE MODELING & SIMULATION, 2006, 5 (01): : 116 - 129