A method is validated for the determination of anions with capillary electrophoresis (CE) in combination with indirect UV detection. The method described here is used for the analysis of eight of the most common anions (fluoride, chloride, bromide, sulphate, nitrate, nitrite, thiosulphate and phosphate). Next, the method is compared with a another buffer system for the determination of anions with CE and indirect UV detection. Typical limits of detection are obtained between 1 and 3 mg/l for the above-mentioned compounds. The repeatability and reproducibility of the system differs per compound and is, with the exception of fluoride and phosphate, between 4 and 6% and 5-10%, respectively. Linearity was observed between 1 and 10 mg/l. The method is applied for the determination of anions in drinking water, serum and urine.