The effect of CO2 concentration on the rate of photorespiratory ammonium excretion and on glutamine synthetase (GS) and carbonic anhydrase (CA) isoenzymes activities has been studied in Chlamydomonas reinhardtii cw-15 mutant (lacking cell wall) and in the high CO2-requiring double mutant cia-3/cw-15 (lacking cell wall and chloroplastic carbonic anhydrase). In cw-15 cells, both the extracellular (CA(ext)) and chloroplastic (CA(chl),) CA activities increased after transferring cells from media bubbled with 5% CO2 in air (v/v, high-C-i cells) to 0.03% CO2 (low-C-i cells), whereas in cia-3/cw-15 cells only the CA(ext) was induced after adaptation to low-C-i conditions and the CA(chl) activity was negligible. During adaptation to low-C-i conditions in the presence of 1 mM of 1-methionine-D,L-sulfoximine (MSX), a specific inhibitor of GS activity, both mutant strains excreted photorespiratory ammonium into nitrogen free medium. In addition, the ammonium excretion rate by cw-15 in the presence of MSX was lower in cells grown and kept at 5% CO2 than in high-C-i cells adapted to 0.03% CO2. The double mutant cia-3/cw-15 excreted photorespiratory ammonium at a higher rate than did cw-15. Total GS activity (GS-1 plus GS-2) increased during adaptation to 0.03% CO2 in both strains of C. reinhardtii However, only the activity GS-2, which is located in the chloroplast, increased during the adaptation to low CO2, whereas the cytosolic GS-1 levels remained similar in high and low-C-i cells. We conclude that: (1) cia-3/cw-15 cells lack chloroplastic CA activity. (2) in C. reinhardtii photorespiratory ammonium is refixed in the chloroplasts through the GS-2/GOGAT cycle; and (3) chloroplastic GS-2 concentration changes in response to the variation of environmental CO2 concentration.