Long-read PacBio genome sequencing of four environmental saprophytic Sporothrix species spanning the pathogenic clade

被引：0
|
作者：
Weian Du
Domenico Giosa
Junkang Wei
Letterio Giuffrè
Ge Shi
Lamya El Aamri
Enrico D’Alessandro
Majida Hafidi
Sybren de Hoog
Orazio Romeo
Huaiqiu Huang
机构：
[1] the Third Affiliated Hospital of Sun Yat-sen University,Department of Dermatology and Venereology
[2] University of Messina,Department of Chemical, Biological, Pharmaceutical and Environmental Sciences
[3] School of Pharmaceutical Sciences,Medical Cosmetic and Plastic Surgery Center
[4] Sun Yat-sen University,Department of Biology
[5] The Sixth Affiliated Hospital of Sun Yat-sen University,Department of Veterinary Sciences
[6] Moulay Ismail University,undefined
[7] University of Messina,undefined
[8] Center of Expertise in Mycology of Radboud University Medical Center / Canisius Wilhelmina Hospital,undefined
来源：
BMC Genomics | / 23卷
关键词：
Sporotrichosis; SMRT PacBio sequencing; Long-read sequencing; De novo assembly; Comparative genomics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Whole-genome long-read TAPS deciphers DNA methylation patterns at base resolution using PacBio SMRT sequencing technology
    Chen, Jinfeng
    Cheng, Jingfei
    Chen, Xiufei
    Inoue, Masato
    Liu, Yibin
    Song, Chun-Xiao
    NUCLEIC ACIDS RESEARCH, 2022, 50 (18) : E104
  • [42] Long-read sequencing uncovers the adaptive topography of a carnivorous plant genome
    Lan, Tianying
    Renner, Tanya
    Ibarra-Laclette, Enrique
    Farr, Kimberly M.
    Chang, Tien-Hao
    Alan Cervantes-Perez, Sergio
    Zheng, Chunfang
    Sankoff, David
    Tang, Haibao
    Purbojati, Rikky W.
    Putra, Alexander
    Drautz-Moses, Daniela I.
    Schuster, Stephan C.
    Herrera-Estrella, Luis
    Albert, Victor A.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (22) : E4435 - E4441
  • [43] Whole Genome Assembly of Human Papillomavirus by Nanopore Long-Read Sequencing
    Yang, Shuaibing
    Zhao, Qianqian
    Tang, Lihua
    Chen, Zejia
    Wu, Zhaoting
    Li, Kaixin
    Lin, Ruoru
    Chen, Yang
    Ou, Danlin
    Zhou, Li
    Xu, Jianzhen
    Qin, Qingsong
    FRONTIERS IN GENETICS, 2022, 12
  • [44] Long-read sequencing and de novo assembly of the cynomolgus macaque genome
    Bai, Bing
    Wang, Yi
    Zhu, Ran
    Zhang, Yaolei
    Wang, Hong
    Fan, Guangyi
    Liu, Xin
    Shi, Hong
    Niu, Yuyu
    Ji, Weizhi
    JOURNAL OF GENETICS AND GENOMICS, 2022, 49 (10) : 975 - 978
  • [45] Long-read whole-genome sequencing for the genetic diagnosis of dystrophinopathies
    Xie, Zhiying
    Sun, Chengyue
    Zhang, Siwen
    Liu, Yilin
    Yu, Meng
    Zheng, Yiming
    Meng, Lingchao
    Acharya, Anushree
    Cornejo-Sanchez, Diana M.
    Wang, Gao
    Zhang, Wei
    Schrauwen, Isabelle
    Leal, Suzanne M.
    Wang, Zhaoxia
    Yuan, Yun
    ANNALS OF CLINICAL AND TRANSLATIONAL NEUROLOGY, 2020, 7 (10): : 2041 - 2046
  • [46] Long-read genome sequencing informs the molecular etiology of imprinting disorders
    Dixon, Katherine
    Shen, Yaoqing
    Chin, Hui-Lin
    Gazzaz, Nour
    Huynh, Stephanie
    Chan, Simon
    Zhang, Cathy
    Culibrk, Luka
    O'Neill, Kieran
    Mungall, Karen
    Mungall, Andrew
    Moore, Richard
    Gibson, William
    Chanoine, Jean-Pierre
    Boerkoel, Cornelius
    Jones, Steven
    GENETICS IN MEDICINE, 2022, 24 (03) : S214 - S215
  • [47] Improved contiguity of the threespine stickleback genome using long-read sequencing
    Nath, Shivangi
    Shaw, Daniel E.
    White, Michael A.
    G3-GENES GENOMES GENETICS, 2021, 11 (02):
  • [48] Long-read sequencing and de novo assembly of the cynomolgus macaque genome
    Bing Bai
    Yi Wang
    Ran Zhu
    Yaolei Zhang
    Hong Wang
    Guangyi Fan
    Xin Liu
    Hong Shi
    Yuyu Niu
    Weizhi Ji
    JournalofGeneticsandGenomics, 2022, 49 (10) : 975 - 978
  • [49] Long-Read Sequencing Identifies Novel Pathogenic Intronic Variants in Gitelman Syndrome
    Viering, Daan H. H. M.
    Hureaux, Marguerite
    Neveling, Kornelia
    Latta, Femke
    Kwint, Michael
    Blanchard, Anne
    Konrad, Martin
    Bindels, Rene J. M.
    Schlingmann, Karl-Peter
    Vargas-Poussou, Rosa
    de Baaij, Jeroen H. F.
    JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2023, 34 (02): : 333 - 345
  • [50] LONG-READ SEQUENCING IDENTIFIES NOVEL PATHOGENIC INTRONIC VARIANTS IN GITELMAN SYNDROME
    Viering, Daan
    Hureaux, Marguerite
    Neveling, Kornelia
    Blanchard, Anne
    Konrad, Martin
    Bindels, Rene
    Schlingmann, Karl Peter
    Vargas-Poussou, Rosa
    de Baaij, Jeroen
    NEPHROLOGY DIALYSIS TRANSPLANTATION, 2023, 38 : I10 - I10
12345