Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes

被引:0
|
作者
David Martin
Cristina Pantoja
Ana Fernández Miñán
Christian Valdes-Quezada
Eduardo Moltó
Fuencisla Matesanz
Ozren Bogdanović
Elisa de la Calle-Mustienes
Orlando Domínguez
Leila Taher
Mayra Furlan-Magaril
Antonio Alcina
Susana Cañón
María Fedetz
María A Blasco
Paulo S Pereira
Ivan Ovcharenko
Félix Recillas-Targa
Lluís Montoliu
Miguel Manzanares
Roderic Guigó
Manuel Serrano
Fernando Casares
José Luis Gómez-Skarmeta
机构
[1] Center for Genomic Regulation,Departamento de Genética Molecular
[2] Universitat Pompeu Fabra,Department of Molecular and Cellular Biology
[3] Centro Nacional de Investigaciones Oncológicas,undefined
[4] Centro Andaluz de Biología del Desarrollo,undefined
[5] Consejo Superior de Investigaciones Científicas (CSIC)–Universidad Pablo de Olavide (UPO),undefined
[6] Instituto de Fisiología Celular,undefined
[7] Universidad Nacional Autónoma de México,undefined
[8] Centro Nacional de Biotecnología,undefined
[9] CSIC,undefined
[10] Centro de Investigación Biomédica en Red de Enfermedades Raras,undefined
[11] Instituto de Salud Carlos III (ISCIII),undefined
[12] Instituto de Parasitología y Biomedicina Lopez-Neyra,undefined
[13] CSIC,undefined
[14] National Center for Biotechnology Information (NCBI),undefined
[15] National Library of Medicine,undefined
[16] National Institutes of Health (NIH),undefined
[17] Centro Nacional de Investigaciones Cardiovasculares (CNIC),undefined
[18] Instituto de Biologia Moleculare Celular (IBMC),undefined
[19] Universidade do Porto,undefined
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Identifying genes associated with SNPs in non-coding regions is difficult as the SNPs are often located far from the promoters they impact. Cross-species comparison of sites occupied by the insulating protein CTCF reveals conserved boundaries between genes often associated with disease. Multiple sclerosis–associated SNPs occur in the GFI1-EVI5 genomic region near several constitutively bound CTCF sites, enabling the authors to propose GFI1 as the gene linked to MS instead of the previously suggested EVI5.
引用
收藏
页码:708 / 714
页数:6
相关论文
共 50 条
  • [41] Genome-wide identification of Chiari malformation type I associated candidate genes and chromosomal variations
    Avsar, Timucin
    Calis, Seyma
    Yilmaz, Baran
    Demirci Otluoglu, Gulden
    Holyavkin, Can
    Kilic, Turker
    [J]. TURKISH JOURNAL OF BIOLOGY, 2020, 44 (06) : 449 - +
  • [42] Genome-wide approaches for the identification of markers and genes associated with sugarcane yellow leaf virus resistance
    Gonzaga Pimenta, Ricardo Jose
    Aono, Alexandre Hild
    Villavicencio Burbano, Roberto Carlos
    Coutinho, Alisson Esdras
    da Silva, Carla Cristina
    Antonio dos Anjos, Ivan
    Perecin, Dilermando
    de Andrade Landell, Marcos Guimaraes
    Goncalves, Marcos Cesar
    Pinto, Luciana Rossini
    de Souza, Anete Pereira
    [J]. SCIENTIFIC REPORTS, 2021, 11 (01)
  • [43] Genome-wide identification of candidate genes related to disease resistance and high biomass in tetraploid Paulownia
    Cao, Xibing
    Zhai, Xiaoqiao
    Xu, Enkai
    Zhao, Zhenli
    Fan, Guoqiang
    [J]. ACTA PHYSIOLOGIAE PLANTARUM, 2020, 42 (11)
  • [44] Genome-Wide Identification of NBS-Encoding Disease Resistance Genes in Gerbera (Gerbera hybrida)
    Bhattarai, Krishna
    Peng, Ze
    Deng, Zhanao
    [J]. HORTSCIENCE, 2020, 55 (09) : S121 - S122
  • [45] Systematic genome-wide approach to positional candidate cloning for identification of novel human disease genes
    Kiyosawa, H
    Kawashima, T
    Silva, D
    Petrovsky, N
    Hasegawa, Y
    Sakai, K
    Hayashizaki, Y
    [J]. INTERNAL MEDICINE JOURNAL, 2004, 34 (03) : 79 - 90
  • [46] Genome-wide identification of candidate genes related to disease resistance and high biomass in tetraploid Paulownia
    Xibing Cao
    Xiaoqiao Zhai
    Enkai Xu
    Zhenli Zhao
    Guoqiang Fan
    [J]. Acta Physiologiae Plantarum, 2020, 42
  • [47] Probability of detecting disease-associated single nucleotide polymorphisms in case-control genome-wide association studies
    Gail, Mitchell H.
    Pfeiffer, Ruth M.
    Wheeler, William
    Pee, David
    [J]. BIOSTATISTICS, 2008, 9 (02) : 201 - 215
  • [48] Association Study of Coronary Artery Disease-Associated Genome-Wide Significant SNPs with Coronary Stenosis in Pakistani Population
    Cheema, Asma Naseer
    Pirim, Dilek
    Wang, Xingbin
    Ali, Jabar
    Bhatti, Attya
    John, Peter
    Feingold, Eleanor
    Demirci, F. Yesim
    Kamboh, M. Ilyas
    [J]. DISEASE MARKERS, 2020, 2020
  • [49] Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles
    Pan, Xiaoyong
    Jensen, Lars Juhl
    Gorodkin, Jan
    [J]. BIOINFORMATICS, 2019, 35 (09) : 1494 - 1502
  • [50] Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response
    Zhong, Mei
    Niu, Wei
    Lu, Zhi John
    Sarov, Mihail
    Murray, John I.
    Janette, Judith
    Raha, Debasish
    Sheaffer, Karyn L.
    Lam, Hugo Y. K.
    Preston, Elicia
    Slightham, Cindie
    Hillier, LaDeana W.
    Brock, Trisha
    Agarwal, Ashish
    Auerbach, Raymond
    Hyman, Anthony A.
    Gerstein, Mark
    Mango, Susan E.
    Kim, Stuart K.
    Waterston, Robert H.
    Reinke, Valerie
    Snyder, Michael
    [J]. PLOS GENETICS, 2010, 6 (02):