Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes

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作者
David Martin
Cristina Pantoja
Ana Fernández Miñán
Christian Valdes-Quezada
Eduardo Moltó
Fuencisla Matesanz
Ozren Bogdanović
Elisa de la Calle-Mustienes
Orlando Domínguez
Leila Taher
Mayra Furlan-Magaril
Antonio Alcina
Susana Cañón
María Fedetz
María A Blasco
Paulo S Pereira
Ivan Ovcharenko
Félix Recillas-Targa
Lluís Montoliu
Miguel Manzanares
Roderic Guigó
Manuel Serrano
Fernando Casares
José Luis Gómez-Skarmeta
机构
[1] Center for Genomic Regulation,Departamento de Genética Molecular
[2] Universitat Pompeu Fabra,Department of Molecular and Cellular Biology
[3] Centro Nacional de Investigaciones Oncológicas,undefined
[4] Centro Andaluz de Biología del Desarrollo,undefined
[5] Consejo Superior de Investigaciones Científicas (CSIC)–Universidad Pablo de Olavide (UPO),undefined
[6] Instituto de Fisiología Celular,undefined
[7] Universidad Nacional Autónoma de México,undefined
[8] Centro Nacional de Biotecnología,undefined
[9] CSIC,undefined
[10] Centro de Investigación Biomédica en Red de Enfermedades Raras,undefined
[11] Instituto de Salud Carlos III (ISCIII),undefined
[12] Instituto de Parasitología y Biomedicina Lopez-Neyra,undefined
[13] CSIC,undefined
[14] National Center for Biotechnology Information (NCBI),undefined
[15] National Library of Medicine,undefined
[16] National Institutes of Health (NIH),undefined
[17] Centro Nacional de Investigaciones Cardiovasculares (CNIC),undefined
[18] Instituto de Biologia Moleculare Celular (IBMC),undefined
[19] Universidade do Porto,undefined
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摘要
Identifying genes associated with SNPs in non-coding regions is difficult as the SNPs are often located far from the promoters they impact. Cross-species comparison of sites occupied by the insulating protein CTCF reveals conserved boundaries between genes often associated with disease. Multiple sclerosis–associated SNPs occur in the GFI1-EVI5 genomic region near several constitutively bound CTCF sites, enabling the authors to propose GFI1 as the gene linked to MS instead of the previously suggested EVI5.
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页码:708 / 714
页数:6
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