Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation

被引：0
|
作者：
Junbai Wang
Agnieszka Malecka
Gunhild Trøen
Jan Delabie
机构：
[1] Oslo University Hospital - Norwegian Radium Hospital,Pathology Department
来源：
BMC Genomics | / 16卷
关键词：
Transcription Factor Binding; Transcription Factor Binding Site; Electrophoretic Mobility Shift Assay; Transcription Factor Binding Site Sequence; Parallel Ensemble;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs
    Liu, Bingchuan
    Chen, Jiajia
    Shen, Bairong
    BMC SYSTEMS BIOLOGY, 2011, 5
  • [42] Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function
    Colin R. Lickwar
    Florian Mueller
    Sean E. Hanlon
    James G. McNally
    Jason D. Lieb
    Nature, 2012, 484 : 251 - 255
  • [43] Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences
    Andrabi, Munazah
    Hutchins, Andrew Paul
    Miranda-Saavedra, Diego
    Kono, Hidetoshi
    Nussinov, Ruth
    Mizuguchi, Kenji
    Ahmad, Shandar
    SCIENTIFIC REPORTS, 2017, 7
  • [44] Genome-wide Profiling of Transcription Factor-DNA Binding Interactions in Candida albicans: A Comprehensive CUT&RUN Method and Data Analysis Workflow
    Qasim, Mohammad N.
    Arevalo, Ashley Valle
    Paropkari, Akshay D.
    Ennis, Craig L.
    Sindi, Suzanne S.
    Nobile, Clarissa J.
    Hernday, Aaron D.
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2022, (182):
  • [45] Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses
    Wang, Bei
    Jin, Qijiang
    Zhang, Xiao
    Mattson, Neil S.
    Ren, Huihui
    Cao, Jing
    Wang, Yanjie
    Yao, Dongrui
    Xu, Yingchun
    SCIENTIFIC REPORTS, 2018, 8
  • [46] Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses
    Bei Wang
    Qijiang Jin
    Xiao Zhang
    Neil S. Mattson
    Huihui Ren
    Jing Cao
    Yanjie Wang
    Dongrui Yao
    Yingchun Xu
    Scientific Reports, 8
  • [47] Total Binding Affinity Profiles of Regulatory Regions Predict Transcription Factor Binding and Gene Expression in Human Cells
    Grassi, Elena
    Zapparoli, Ettore
    Molineris, Ivan
    Provero, Paolo
    PLOS ONE, 2015, 10 (11):
  • [48] Genome-Wide Identification and Analysis of the GRAS Transcription Factor Gene Family in Theobroma cacao
    Hou, Sijia
    Zhang, Qianqian
    Chen, Jing
    Meng, Jianqiao
    Wang, Cong
    Du, Junhong
    Guo, Yunqian
    GENES, 2023, 14 (01)
  • [49] Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao
    Shen, Shiya
    Zhang, Qianru
    Shi, Yu
    Sun, Zhenmei
    Zhang, Qianqian
    Hou, Sijia
    Wu, Rongling
    Jiang, Libo
    Zhao, Xiyang
    Guo, Yunqian
    GENES, 2020, 11 (01)
  • [50] Genome-wide binding analysis of transcription factor Rice Indeterminate 1 reveals a complex network controlling rice floral transition
    Shuo Zhang
    Li Deng
    Lun Zhao
    Changyin Wu
    JournalofIntegrativePlantBiology, 2022, 64 (09) : 1690 - 1705
12345