SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation

被引:0
|
作者
Joseph Bergenstråhle
Ludvig Bergenstråhle
Joakim Lundeberg
机构
[1] Science for Life Laboratory,
[2] KTH Royal Institute of Technology,undefined
[3] Department of Bioengineering,undefined
[4] Stanford University,undefined
来源
关键词
Spatial transcriptomics; Cluster analysis; Data visualization; R package;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] rMAT - an R/Bioconductor package for analyzing ChIP-chip experiments
    Droit, Arnaud
    Cheung, Charles
    Gottardo, Raphael
    BIOINFORMATICS, 2010, 26 (05) : 678 - 679
  • [42] MWASTools: an R/bioconductor package for metabolome-wide association studies
    Rodriguez-Martinez, Andrea
    Posma, Joram M.
    Ayala, Rafael
    Neves, Ana L.
    Anwar, Maryam
    Petretto, Enrico
    Emanueli, Costanza
    Gauguier, Dominique
    Nicholson, Jeremy K.
    Dumas, Marc-Emmanuel
    BIOINFORMATICS, 2018, 34 (05) : 890 - 892
  • [43] Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts
    Joern Toedling
    Oleg Sklyar
    Wolfgang Huber
    BMC Bioinformatics, 8
  • [44] cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data
    Eling, Nils
    Damond, Nicolas
    Hoch, Tobias
    Bodenmiller, Bernd
    BIOINFORMATICS, 2020, 36 (24) : 5706 - 5708
  • [45] psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes
    Gutierrez-Sacristan, Alba
    Hernandez-Ferrer, Carles
    Gonzalez, Juan R.
    Furlong, Laura I.
    BIOINFORMATICS, 2017, 33 (24) : 4004 - 4006
  • [46] stam – a Bioconductor compliant R package for structured analysis of microarray data
    Claudio Lottaz
    Rainer Spang
    BMC Bioinformatics, 6
  • [47] GenomicInteractions: An R/Bioconductor package for manipulating and investigating chromatin interaction data
    Nathan Harmston
    Elizabeth Ing-Simmons
    Malcolm Perry
    Anja Barešić
    Boris Lenhard
    BMC Genomics, 16
  • [48] HYBRIDEXPRESS: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors
    Almeida-Silva, Fabricio
    Prost-Boxoen, Lucas
    Van de Peer, Yves
    NEW PHYTOLOGIST, 2024, 243 (02) : 811 - 819
  • [49] Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
    Steffen Durinck
    Paul T Spellman
    Ewan Birney
    Wolfgang Huber
    Nature Protocols, 2009, 4 : 1184 - 1191
  • [50] mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics
    Argiris Sakellariou
    George Spyrou
    BMC Bioinformatics, 16