Measuring similarities between transcription factor binding sites

被引：0
|
作者：
Szymon M Kielbasa
Didier Gonze
Hanspeter Herzel
机构：
[1] Humboldt University,Institute for Theoretical Biology
[2] Université Libre de Bruxelles,Unité de Chronobiologie Théorique
来源：
BMC Bioinformatics | / 6卷
关键词：
Transcription Factor Binding Site; Circadian Clock; Similar Matrice; bHLH Transcription Factor; Phylogenetic Footprinting;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Predicting Transcription Factor Binding Sites with Deep Learning
    Ghosh, Nimisha
    Santoni, Daniele
    Saha, Indrajit
    Felici, Giovanni
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (09)
  • [32] Predicting tissue specific transcription factor binding sites
    Zhong, Shan
    He, Xin
    Bar-Joseph, Ziv
    BMC GENOMICS, 2013, 14
  • [33] Method for identifying transcription factor binding sites in yeast
    Tsai, Huai-Kuang
    Huang, Grace Tzu-Wei
    Chou, Meng-Yuan
    Lu, Henry Horng-Shing
    Li, Wen-Hsiung
    BIOINFORMATICS, 2006, 22 (14) : 1675 - 1681
  • [34] Effects of cytosine methylation on transcription factor binding sites
    Yulia A Medvedeva
    Abdullah M Khamis
    Ivan V Kulakovskiy
    Wail Ba-Alawi
    Md Shariful I Bhuyan
    Hideya Kawaji
    Timo Lassmann
    Matthias Harbers
    Alistair RR Forrest
    Vladimir B Bajic
    BMC Genomics, 15
  • [35] A SUBSPACE METHOD FOR THE DETECTION OF TRANSCRIPTION FACTOR BINDING SITES
    Pairo, Erola
    Marco, Santiago
    Perera, Alexandre
    BIONFORMATICS 2010: PROCEEDINGS OF THE FIRST INTERNATIONAL CONFERENCE ON BIOINFORMATICS, 2010, : 102 - 107
  • [36] Variable structure motifs for transcription factor binding sites
    John E Reid
    Kenneth J Evans
    Nigel Dyer
    Lorenz Wernisch
    Sascha Ott
    BMC Genomics, 11
  • [37] Study on transcription factor binding sites discovery algorithms
    School of Computer Science and Technology, Harbin Institute of Technology, Harbin 150001, China
    Tien Tzu Hsueh Pao, 2007, SUPPL. 2 (83-89):
  • [38] Searching for transcription factor binding sites in vector spaces
    Lee, Chih
    Huang, Chun-Hsi
    BMC BIOINFORMATICS, 2012, 13
  • [39] It is in the flanks: Conformational flexibility of transcription factor binding sites
    Chiu, Tsu-Pei
    Li, Jinsen
    Jiang, Yibei
    Rohs, Remo
    BIOPHYSICAL JOURNAL, 2022, 121 (20) : 3765 - 3767
  • [40] In silico representation and discovery of transcription factor binding sites
    Pavesi, G
    Mauri, G
    Pesole, G
    BRIEFINGS IN BIOINFORMATICS, 2004, 5 (03) : 217 - 236
12345