The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

被引：0

作者：

Leho Tedersoo

Vladimir Mikryukov

Sten Anslan

Mohammad Bahram

Abdul Nasir Khalid

Adriana Corrales

Ahto Agan

Aída-M. Vasco-Palacios

Alessandro Saitta

Alexandre Antonelli

Andrea C. Rinaldi

Annemieke Verbeken

Bobby P. Sulistyo

Boris Tamgnoue

Brendan Furneaux

Camila Duarte Ritter

Casper Nyamukondiwa

Cathy Sharp

César Marín

D. Q. Dai

Daniyal Gohar

Dipon Sharmah

Elisabeth Machteld Biersma

Erin K. Cameron

Eske De Crop

Eveli Otsing

Evgeny A. Davydov

Felipe E. Albornoz

Francis Q. Brearley

Franz Buegger

Genevieve Gates

Geoffrey Zahn

Gregory Bonito

Indrek Hiiesalu

Inga Hiiesalu

Irma Zettur

Isabel C. Barrio

Jaan Pärn

Jacob Heilmann-Clausen

Jelena Ankuda

John Y. Kupagme

Joosep Sarapuu

Jose G. Maciá-Vicente

Joseph Djeugap Fovo

József Geml

Juha M. Alatalo

Julieta Alvarez-Manjarrez

Jutamart Monkai

Kadri Põldmaa

Kadri Runnel

机构：

[1] University of Tartu,Mycology and Microbiology Center

[2] Institute of Ecology and Earth Sciences,Department of Ecology

[3] Swedish University of Agricultural Sciences,Department of Botany

[4] University of the Punjab,Centro de Investigaciones en Microbiología y Biotecnología

[5] Universidad del Rosario,UR (CIMBIUR), Facultad de Ciencias Naturales

[6] Universidad de Antioquia UdeA,Grupo de Microbiología Ambiental y BioMicro, Escuela de Microbiología

[7] University of Palermo,Department of Agricultural, Food and Forest Sciences

[8] Royal Botanic Gardens,Department of Biomedical Sciences

[9] University of Cagliari,Research Group Mycology, Department of Biology

[10] Ghent University,Department of Biomedicine

[11] Indonesia International Institute for Life Sciences,Plant Pathology and Agricultural Zoology Research Unit, Department of Plant Protection, Faculty of Agronomy and Agricultural Sciences

[12] University of Dschang,Department of Ecology and Genetics

[13] Uppsala University,Eukaryotic Microbiology

[14] University of Duisburg-Essen,Department of Biological Sciences and Biotechnology

[15] Botswana International University of Science and Technology,Institute of Botany

[16] Natural History Museum of Zimbabwe,Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering

[17] Czech Academy of Sciences,Department of Botany, Jawaharlal Nehru Rajkeeya Mahavidyalaya

[18] Qujing Normal University,Natural History Museum of Denmark

[19] Pondicherry University,Department of Environmental Science

[20] British Antarctic Survey,Department of Natural Sciences

[21] NERC,Institute of Biochemical Plant Pathology

[22] University of Copenhagen,Biology Department

[23] Saint Mary’s University,Plant, Soil and Microbial Sciences

[24] Altai State University,Faculty of Environmental and Forest Sciences

[25] CSIRO Land and Water,Center for Macroecology, Evolution and Climate, GLOBE Institute

[26] Manchester Metropolitan University,Department of Ecology

[27] Helmholtz Zentrum München - Deutsches Forschungszentrum Für Gesundheit und Umwelt,Plant Ecology and Nature Conservation

[28] Tasmanian Institute of Agriculture,Lendület Environmental Microbiome Research Group

[29] Utah Valley University,Environmental Science Center

[30] Michigan State University,Instituto de Geología

[31] Agricultural University of Iceland,Center of Excellence in Fungal Research

[32] University of Copenhagen,Institute of Forestry and Rural Engineering

[33] Institute of Forestry of Lithuanian Research Centre for Agriculture and Forestry (LAMMC),Department of Arctic and Marine Biology

[34] Wageningen University & Research,Research Unit Tropical Mycology and Plant

[35] Eszterházy Károly University,Soil Fungi Interactions, Faculty of Agronomy

[36] Qatar University,Chair of Hydrobiology and Fishery

[37] Universidad Nacional Autónoma de México,Department of Plant Biology

[38] Mae Fah Luang University,Department of Biology

[39] Estonian University of Life Sciences,Department of Environmental and Forest Biology

[40] UiT – Arctic University of Norway,Department of Plant Sciences

[41] University of Parakou,Departamento de Biociências

[42] Estonian University of Life Sciences,Department of Genetics, Faculty of Natural Sciences

[43] University of Ilorin,Department of Environment

[44] Syracuse University,Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering

[45] State University of New York,Faculty of Agronomy

[46] College of Environmental Science and Forestry,Institute of Agricultural and Environmental Sciences

[47] Quaid-I-Azam University,CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany

[48] Universidade Federal de Sergipe,Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre

[49] University of the Free State,Instituto de Ciencias y Humanidades Lic. Salvador González Lobo

[50] Ghent University,Instituto de Biología

来源：

Fungal Diversity | 2021年 / 111卷

关键词：

Soil fungi; Global dataset; PacBio sequencing; Fungal richness;

D O I：

暂无

中图分类号：

学科分类号：

摘要：

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

引用

页码：573 / 588

页数：15

共 50 条

[21] Molecular Detection and Exploration of Diversity Among Fungal Consortium Involved in Phosphate Solubilization
Fatima, Faria
Pathak, Neelam
Srivastava, Deepti
Verma, Smita Rastogi
GEOMICROBIOLOGY JOURNAL, 2021, 38 (01) : 29 - 35
[22] Global dataset of soil organic carbon in tidal marshes
Tania L. Maxwell
André S. Rovai
Maria Fernanda Adame
Janine B. Adams
José Álvarez-Rogel
William E. N. Austin
Kim Beasy
Francesco Boscutti
Michael E. Böttcher
Tjeerd J. Bouma
Richard H. Bulmer
Annette Burden
Shannon A. Burke
Saritta Camacho
Doongar R. Chaudhary
Gail L. Chmura
Margareth Copertino
Grace M. Cott
Christopher Craft
John Day
Carmen B. de los Santos
Lionel Denis
Weixin Ding
Joanna C. Ellison
Carolyn J. Ewers Lewis
Luise Giani
Maria Gispert
Swanne Gontharet
José A. González-Pérez
M. Nazaret González-Alcaraz
Connor Gorham
Anna Elizabeth L. Graversen
Anthony Grey
Roberta Guerra
Qiang He
James R. Holmquist
Alice R. Jones
José A. Juanes
Brian P. Kelleher
Karen E. Kohfeld
Dorte Krause-Jensen
Anna Lafratta
Paul S. Lavery
Edward A. Laws
Carmen Leiva-Dueñas
Pei Sun Loh
Catherine E. Lovelock
Carolyn J. Lundquist
Peter I. Macreadie
Inés Mazarrasa
Scientific Data, 10
[23] Global dataset of soil organic carbon in tidal marshes
Maxwell, Tania L.
Rovai, Andre S.
Adame, Maria Fernanda
Adams, Janine B.
Alvarez-Rogel, Jose
Austin, William E. N.
Beasy, Kim
Boscutti, Francesco
Boettcher, Michael E.
Bouma, Tjeerd J.
Bulmer, Richard H.
Burden, Annette
Burke, Shannon A.
Camacho, Saritta
Chaudhary, Doongar R.
Chmura, Gail L.
Copertino, Margareth
Cott, Grace M.
Craft, Christopher
Day, John
de los Santos, Carmen B.
Denis, Lionel
Ding, Weixin
Ellison, Joanna C.
Ewers Lewis, Carolyn J.
Giani, Luise
Gispert, Maria
Gontharet, Swanne
Gonzalez-Perez, Jose A.
Gonzalez-Alcaraz, M. Nazaret
Gorham, Connor
Graversen, Anna Elizabeth L.
Grey, Anthony
Guerra, Roberta
He, Qiang
Holmquist, James R.
Jones, Alice R.
Juanes, Jose A.
Kelleher, Brian P.
Kohfeld, Karen E.
Krause-Jensen, Dorte
Lafratta, Anna
Lavery, Paul S.
Laws, Edward A.
Leiva-Duenas, Carmen
Loh, Pei Sun
Lovelock, Catherine E.
Lundquist, Carolyn J.
Macreadie, Peter, I
Mazarrasa, Ines
SCIENTIFIC DATA, 2023, 10 (01)
[24] The global distribution and diversity of soil invertebrates
Garey, J. R.
Wu, T.
Ayres, E.
Bardgett, R. D.
Wall, D. H.
INTEGRATIVE AND COMPARATIVE BIOLOGY, 2012, 52 : E63 - E63
[25] Global diversity and geography of soil fungi
Tedersoo, Leho
Bahram, Mohammad
Polme, Sergei
Koljalg, Urmas
Yorou, Nourou S.
Wijesundera, Ravi
Villarreal Ruiz, Luis
Vasco-Palacios, Aida M.
Pham Quang Thu
Suija, Ave
Smith, Matthew E.
Sharp, Cathy
Saluveer, Erki
Saitta, Alessandro
Rosas, Miguel
Riit, Taavi
Ratkowsky, David
Pritsch, Karin
Poldmaa, Kadri
Piepenbring, Meike
Phosri, Cherdchai
Peterson, Marko
Parts, Kaarin
Paertel, Kadri
Otsing, Eveli
Nouhra, Eduardo
Njouonkou, Andre L.
Nilsson, R. Henrik
Morgado, Luis N.
Mayor, Jordan
May, Tom W.
Majuakim, Luiza
Lodge, D. Jean
Lee, Su See
Larsson, Karl-Henrik
Kohout, Petr
Hosaka, Kentaro
Hiiesalu, Indrek
Henkel, Terry W.
Harend, Helery
Guo, Liang-dong
Greslebin, Alina
Grelet, Gwen
Geml, Jozsef
Gates, Genevieve
Dunstan, William
Dunk, Chris
Drenkhan, Rein
Dearnaley, John
De Kesel, Andre
SCIENCE, 2014, 346 (6213) : 1078 - +
[26] A Global Survey of Mycobacterial Diversity in Soil
Walsh, Corinne M.
Gebert, Matthew J.
Delgado-Baquerizo, Manuel
Maestre, Fernando T.
Fierer, Noah
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2019, 85 (17)
[27] Pine invasion drives loss of soil fungal diversity
S. J. Sapsford
A. Wakelin
D. A. Peltzer
I. A. Dickie
Biological Invasions, 2022, 24 : 401 - 414
[28] Effect of fire on abundance and fungal diversity in the Cerrado soil
Silva, Cassia
Viana, Igor
de Souza, Dalmarcia
Silva, Damiana
Portella, Augustus
Giongo, Marcos
CIENCIA FLORESTAL, 2021, 31 (04): : 1910 - 1929
[29] Soil Fungal Diversity of the Aguarongo Andean Forest (Ecuador)
Delgado, Ernesto F.
Valdez, Adrian T.
Covarrubias, Sergio A.
Tosi, Solveig
Nicola, Lidia
BIOLOGY-BASEL, 2021, 10 (12):
[30] Pine invasion drives loss of soil fungal diversity
Sapsford, S. J.
Wakelin, A.
Peltzer, D. A.
Dickie, I. A.
BIOLOGICAL INVASIONS, 2022, 24 (02) : 401 - 414

← 1 2 3 4 5 →