Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data

被引：0
|
作者：
Jianing Gao
Changlin Wan
Huan Zhang
Ao Li
Qiguang Zang
Rongjun Ban
Asim Ali
Zhenghua Yu
Qinghua Shi
Xiaohua Jiang
Yuanwei Zhang
机构：
[1] University of Science and Technology of China,Molecular and Cell Genetics Laboratory, The CAS Key Laboratory of Innate Immunity and Chronic Diseases, Hefei National Laboratory for Physical Sciences at Microscale, School of Life Sciences, CAS Center for Exc
[2] USTC-Shenyang Jinghua Hospital Joint Center of Human Reproduction and Genetics,Reproductive Medicine Center of Jinghua Hospital
[3] University of Science and Technology of China,School of Information Science and Technology
来源：
BMC Bioinformatics | / 18卷
关键词：
Copy number variation; Exome sequencing; Functional analysis; Cancer;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] ReCapSeg: Validation of somatic copy number alterations for CLIA whole exome sequencing
    Lichtenstein, Lee
    Woolf, Betty
    MacBeth, Alyssa
    Birsoy, Ozge
    Lennon, Niall
    CANCER RESEARCH, 2016, 76
  • [42] Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
    Jiantao Wu
    Krzysztof R Grzeda
    Chip Stewart
    Fabian Grubert
    Alexander E Urban
    Michael P Snyder
    Gabor T Marth
    BMC Bioinformatics, 13
  • [43] CEQer: A Graphical Tool for Copy Number and Allelic Imbalance Detection from Whole-Exome Sequencing Data
    Piazza, Rocco
    Magistroni, Vera
    Pirola, Alessandra
    Redaelli, Sara
    Spinelli, Roberta
    Redaelli, Serena
    Galbiati, Marta
    Valletta, Simona
    Giudici, Giovanni
    Cazzaniga, Giovanni
    Gambacorti-Passerini, Carlo
    PLOS ONE, 2013, 8 (10):
  • [44] Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
    Wu, Jiantao
    Grzeda, Krzysztof R.
    Stewart, Chip
    Grubert, Fabian
    Urban, Alexander E.
    Snyder, Michael P.
    Marth, Gabor T.
    BMC BIOINFORMATICS, 2012, 13
  • [45] Copy Number Variation detection from 1000 Genomes project exon capture sequencing data
    Boston College, Chestnut Hill, Boston, MA, United States
    不详
    BMC Bioinform., 1
  • [46] Detection of Copy Number Variations from Targeted Sequencing Data
    Gandin, Ilaria
    Vuckovic, Dragana
    HUMAN HEREDITY, 2013, 76 (02) : 106 - 106
  • [47] Copy Number Variation Detection Workflow using Next Generation Sequencing Data
    Dharanipragada, Prashanthi
    Parekh, Nita
    2016 INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND SYSTEMS BIOLOGY (BSB), 2016,
  • [48] Development of a Convolutional Neural Network Algorithm for Detection of Copy Number Loss in Exome Sequencing Data
    Muthusamy, S.
    Voelkerding, K.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2019, 21 (06): : 1174 - 1175
  • [49] Identification of copy number variants relevant to primary immunodeficiency from exome sequencing data
    Wan, Rensheng
    Schieck, Maximilian
    Hofmann, Winfried
    Knopf, Philipp H. B.
    Proietti, Michele
    de Oteyza, Andres Caballero Garcia
    Illig, Thomas
    Grimbacher, Bodo
    Steinemann, Doris
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 225 - 226
  • [50] EXCAVATOR: detecting copy number variants from whole-exome sequencing data
    Alberto Magi
    Lorenzo Tattini
    Ingrid Cifola
    Romina D’Aurizio
    Matteo Benelli
    Eleonora Mangano
    Cristina Battaglia
    Elena Bonora
    Ants Kurg
    Marco Seri
    Pamela Magini
    Betti Giusti
    Giovanni Romeo
    Tommaso Pippucci
    Gianluca De Bellis
    Rosanna Abbate
    Gian Franco Gensini
    Genome Biology, 14
12345