Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information

被引：0
|
作者：
Je-Gun Joung
Zhangjun Fei
机构：
[1] Cornell University,Boyce Thompson Institute for Plant Research
[2] USDA Robert W. Holley Center for Agriculture and Health,undefined
来源：
BMC Bioinformatics | / 10卷
关键词：
Support Vector Machine; Gene Expression Profile; miRNA Target; Support Vector Machine Classifier; Gene Expression Dataset;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Computational identification of miRNA and their cross kingdom targets from expressed sequence tags of Ocimum basilicum
    Maulikkumar Patel
    Naman Mangukia
    Neha Jha
    Harshida Gadhavi
    Kanisha Shah
    Saumya Patel
    Archana Mankad
    Himanshu Pandya
    Rakesh Rawal
    Molecular Biology Reports, 2019, 46 : 2979 - 2995
  • [22] Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    Segal, E
    Shapira, M
    Regev, A
    Pe'er, D
    Botstein, D
    Koller, D
    Friedman, N
    NATURE GENETICS, 2003, 34 (02) : 166 - 176
  • [23] Gene Expression Profiles Of Chronic Hypersensitivity Pnuemonitis; Identification Of Disease Specific And Diagnostic Markers And Molecular Targets
    Ishikawa, N.
    Horimasu, Y.
    Iwamoto, H.
    Ohshimo, S.
    Fujitaka, K.
    Haruta, Y.
    Murai, H.
    Hattori, N.
    Kohno, N.
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2013, 187
  • [24] Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
    Eran Segal
    Michael Shapira
    Aviv Regev
    Dana Pe'er
    David Botstein
    Daphne Koller
    Nir Friedman
    Nature Genetics, 2003, 34 : 166 - 176
  • [25] FUN-PROSE: A deep learning approach to predict condition-specific gene expression in fungi
    Nambiar, Ananthan
    Dubinkina, Veronika
    Liu, Simon
    Maslov, Sergei
    PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (11)
  • [26] Inferring condition-specific transcription factor function from DNA binding and gene expression data
    McCord, Rachel Patton
    Berger, Michael F.
    Philippakis, Anthony A.
    Bulyk, Martha L.
    MOLECULAR SYSTEMS BIOLOGY, 2007, 3 (1)
  • [27] Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families
    Singh, Larry N.
    Hannenhalli, Sridhar
    NUCLEIC ACIDS RESEARCH, 2010, 38 (03) : 738 - 749
  • [28] A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling
    Hui Liu
    Dong Yue
    Lin Zhang
    Yidong Chen
    Shou-Jiang Gao
    Yufei Huang
    BMC Genomics, 11
  • [29] A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling
    Liu, Hui
    Yue, Dong
    Zhang, Lin
    Chen, Yidong
    Gao, Shou-Jiang
    Huang, Yufei
    BMC GENOMICS, 2010, 11
  • [30] Identification of Mouse Serum miRNA Endogenous References by Global Gene Expression Profiles
    Mi, Qing-Sheng
    Weiland, Matthew
    Qi, Rui-Qun
    Gao, Xing-Hua
    Poisson, Laila M.
    Zhou, Li
    PLOS ONE, 2012, 7 (02):
12345