LTR retrotransposons as source of promoters in the drosophila genome

被引:0
|
作者
I. V. Makunin
A. A. Yurlova
机构
[1] Russian Academy of Science,Institute of Chemical Biology and Fundamental Medicine, Siberian Branch
来源
关键词
Transposable Element; Terminal Repeat; UCSC Genome Browser; Mouse Oocyte; Drosophila Genome;
D O I
暂无
中图分类号
学科分类号
摘要
Mobile genetic elements affect genome structure and function in various ways. Significant number of genes in human and mouse are transcribed from alternative promoters located in LTR retrotransposons. As a rule, these retrotransposons are located upstream of annotated genes, and their promoters initiate transcription of alternative first exons. We investigated role of LTR retrotransposons in expression of genes in Drosophila. Using database of spliced ESTs we identified only 13 potential cases of transcription initiation from long terminal repeats of LTR retrotransposons within euchromatic part of the Drosophila genome. Our results indicate on insignificant role of promoters of LTR retrotransposons in expression of genes in Drosophila.
引用
收藏
页码:1067 / 1069
页数:2
相关论文
共 50 条
  • [31] A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster
    Berezikov, Eugene
    Bucheton, Alain
    Busseau, Isabelle
    GENOME BIOLOGY, 2000, 1 (06):
  • [32] The diversity of LTR retrotransposons
    Havecker, ER
    Gao, X
    Voytas, DF
    GENOME BIOLOGY, 2004, 5 (06)
  • [33] A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster
    Eugene Berezikov
    Alain Bucheton
    Isabelle Busseau
    Genome Biology, 1 (6)
  • [34] Diversity and evolution of LTR retrotransposons in the genome of Phanerochaete chrysosporium (Fungi: Basidiomycota)
    O. S. Novikova
    Russian Journal of Genetics, 2010, 46 : 637 - 644
  • [35] LTR retrotransposons from the Citrus x clementina genome: characterization and application
    Dongliang Du
    Xiaoyun Du
    Matthew R. Mattia
    Yanbo Wang
    Qibin Yu
    Ming Huang
    Yuan Yu
    Jude W. Grosser
    Fred G. Gmitter
    Tree Genetics & Genomes, 2018, 14
  • [36] Three families of LTR retrotransposons are present in the genome of the choanoflagellate Monosiga brevicollis
    Carr, Martin
    Nelson, Michaela
    Leadbeater, Barry S. C.
    Baldauf, Sandra L.
    PROTIST, 2008, 159 (04) : 579 - 590
  • [37] Genome-wide analysis of LTR-retrotransposons in oil palm
    Beule, Thierry
    Agbessi, Mawusse D. T.
    Dussert, Stephane
    Jaligot, Estelle
    Guyot, Romain
    BMC GENOMICS, 2015, 16
  • [38] Structure and evolution of full-length LTR retrotransposons in rice genome
    Xu, Ling
    Zhang, Yue
    Su, Yuan
    Liu, Lin
    Yang, Jing
    Zhu, Youyong
    Li, Chengyun
    PLANT SYSTEMATICS AND EVOLUTION, 2010, 287 (1-2) : 19 - 28
  • [39] Genome-wide analysis of LTR-retrotransposons in oil palm
    Thierry Beulé
    Mawussé DT Agbessi
    Stephane Dussert
    Estelle Jaligot
    Romain Guyot
    BMC Genomics, 16
  • [40] LTR retrotransposons from the Citrus x clementina genome: characterization and application
    Du, Dongliang
    Du, Xiaoyun
    Mattia, Matthew R.
    Wang, Yanbo
    Yu, Qibin
    Huang, Ming
    Yu, Yuan
    Grosser, Jude W.
    Gmitter, Fred G., Jr.
    TREE GENETICS & GENOMES, 2018, 14 (04)