ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw

被引：0
|
作者：
Stefan Milosavljevic
Tony Kuo
Samuele Decarli
Lucas Mohn
Jun Sese
Kentaro K. Shimizu
Rie Shimizu-Inatsugi
Mark D. Robinson
机构：
[1] University of Zurich,Department of Evolutionary Biology and Environmental Studies
[2] University of Zurich,SIB Swiss Institute of Bioinformatics
[3] Centre for Biodiversity Genomics,Department of Computer Science
[4] University of Guelph,Kihara Institute for Biological Research
[5] ETH Zurich,Department of Molecular Life Sciences
[6] AIST Artificial Intelligence Research Center,undefined
[7] Humanome Lab Inc.,undefined
[8] Yokohama City University,undefined
[9] University of Zurich,undefined
来源：
BMC Genomics | / 22卷
关键词：
Snakemake; Epigenetics; Bisulfite-sequencing; Polyploidy; Allopolyploids; Reproducibility; Automation; Workflow; Dna-methylation; Whole-genome-bisulfite-sequencing;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Agalma: an automated phylogenomics workflow
    Dunn, Casey W.
    Howison, Mark
    Zapata, Felipe
    BMC BIOINFORMATICS, 2013, 14
  • [22] Automated workflow for microchimerism analyses
    Wijngaard, A.
    Luiken, B.
    Torun, E.
    Westerink, N.
    Geerligs, J.
    Rozemuller, E.
    Bost, D.
    BONE MARROW TRANSPLANTATION, 2015, 50 : S237 - S238
  • [23] Reproducible automated renewable column generation
    Metzger, Shalina C.
    Ticknor, Brian W.
    Tevepaugh, Kayron N.
    Bostick, Debra A.
    McBay, Eddy H.
    Field, M. Paul
    Kim, Hwan
    Hexel, Cole R.
    SEPARATION SCIENCE AND TECHNOLOGY, 2020, 55 (05) : 860 - 866
  • [24] Agfa automated workflow abounds
    Anon
    Printing News, 2002, 149 (01):
  • [25] Automated QSPR by competitive workflow
    Leahy, DE
    Cartmell, J
    Enoch, S
    Krstajic, D
    Bowen, J
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2005, 230 : U1310 - U1310
  • [26] Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon
    Akagi, Takashi
    Henry, Isabelle M.
    Kawai, Takashi
    Comai, Luca
    Tao, Ryutaro
    PLANT CELL, 2016, 28 (12): : 2905 - 2915
  • [27] AUTOMATED LEGAL GUIDANCE
    Blank, Joshua D.
    Osofsky, Leigh
    CORNELL LAW REVIEW, 2020, 106 (01) : 179 - 245
  • [28] IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments
    Griss, Johannes
    Vinterhalter, Goran
    Schwaemmle, Veit
    JOURNAL OF PROTEOME RESEARCH, 2019, 18 (04) : 1751 - 1759
  • [29] Detailed Implementation of a Reproducible Machine Learning-Enabled Workflow
    Schackart K.E., III
    Imker H.J.
    Cook C.E.
    Data Science Journal, 2024, 23 (01)
  • [30] Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
    Laura Wratten
    Andreas Wilm
    Jonathan Göke
    Nature Methods, 2021, 18 : 1161 - 1168
12345