BayesPeak: Bayesian analysis of ChIP-seq data

被引：0
|
作者：
Christiana Spyrou
Rory Stark
Andy G Lynch
Simon Tavaré
机构：
[1] Centre for Mathematical Sciences,Statistical Laboratory
[2] DAMTP,Centre for Mathematical Sciences
[3] Cambridge Research Institute,Cancer Research UK
[4] Li Ka Shing Centre,Department of Oncology
[5] University of Cambridge,undefined
[6] Li Ka Shing Centre,undefined
来源：
BMC Bioinformatics | / 10卷
关键词：
Hide Markov Model; Transcription Factor Binding Site; Hide State; Reverse Strand; Markov Chain Monte Carlo Algorithm;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] BayesPeak: Bayesian analysis of ChIP-seq data
    Spyrou, Christiana
    Stark, Rory
    Lynch, Andy G.
    Tavare, Simon
    [J]. BMC BIOINFORMATICS, 2009, 10 : 299
  • [2] BayesPeak-an R package for analysing ChIP-seq data
    Cairns, Jonathan
    Spyrou, Christiana
    Stark, Rory
    Smith, Mike L.
    Lynch, Andy G.
    Tavare, Simon
    [J]. BIOINFORMATICS, 2011, 27 (05) : 713 - 714
  • [3] A Bayesian changepoint analysis of ChIP-Seq data of Lamin B
    Herrmann, S.
    Schwender, H.
    Ickstadt, K.
    Mueller, P.
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2014, 1844 (01): : 138 - 144
  • [4] THE ANALYSIS OF CHIP-SEQ DATA
    Ma, Wenxiu
    Wong, Wing Hung
    [J]. METHODS IN ENZYMOLOGY, VOL 497: SYNTHETIC BIOLOGY, METHODS FOR PART/DEVICE CHARACTERIZATION AND CHASSIS ENGINEERING, PT A, 2011, 497 : 51 - 73
  • [5] A fully Bayesian hidden Ising model for ChIP-seq data analysis
    Mo, Qianxing
    [J]. BIOSTATISTICS, 2012, 13 (01) : 113 - 128
  • [6] A Bayesian Graphical Model for ChIP-Seq Data on Histone Modifications
    Mitra, Riten
    Mueller, Peter
    Liang, Shoudan
    Yue, Lu
    Ji, Yuan
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2013, 108 (501) : 69 - 80
  • [7] A Statistical Framework for the Analysis of ChIP-Seq Data
    Kuan, Pei Fen
    Chung, Dongjun
    Pan, Guangjin
    Thomson, James A.
    Stewart, Ron
    Keles, Suenduez
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2011, 106 (495) : 891 - 903
  • [8] Bias in ChIP-seq data
    [J]. Nature Methods, 2014, 11 (1) : 9 - 9
  • [9] Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models
    Klein, Hans-Ulrich
    Schaefer, Martin
    Porse, Bo T.
    Hasemann, Marie S.
    Ickstadt, Katja
    Dugas, Martin
    [J]. BIOINFORMATICS, 2014, 30 (08) : 1154 - 1162
  • [10] Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data
    Ghosh, Debashis
    Qin, Zhaohui S.
    [J]. GENES, 2010, 1 (02) : 317 - 334
12345