Novel structural tree of (α + β)-proteins containing abCd units

被引:0
|
作者
A. B. Gordeev
A. V. Efimov
机构
[1] Russian Academy of Sciences,Institute of Protein Research
来源
Molecular Biology | 2009年 / 43卷
关键词
modeling; classification; database; protein folding; structural motif; structural similarity;
D O I
暂无
中图分类号
学科分类号
摘要
A database of 926 (α + β)-proteins and (α + β)-domains containing abCd units, including 401 non-homologous, was compiled from the Protein Data Bank (total of 2636 PDB entries). A novel structural tree of this structural class of proteins was constructed to include 286 possible polypeptide chain folds. A structural classification of (α + β)-proteins containing abCd unit was developed on the basis of the structural tree. The database and the structural tree are available at http://strees.protres.ru/.
引用
收藏
页码:480 / 484
页数:4
相关论文
共 50 条
  • [1] Novel structural tree of β-proteins containing abcd units
    A. B. Gordeev
    M. S. Kondratova
    A. V. Efimov
    [J]. Molecular Biology, 2008, 42 : 285 - 288
  • [2] Novel structural tree of β-proteins containing abcd units
    Gordeev, A. B.
    Kondratova, M. S.
    Efimov, A. V.
    [J]. MOLECULAR BIOLOGY, 2008, 42 (02) : 285 - 288
  • [3] Novel structural tree of (α plus β)-proteins containing abCd units
    Gordeev, A. B.
    Efimov, A. V.
    [J]. MOLECULAR BIOLOGY, 2009, 43 (03) : 480 - 484
  • [4] A novel structural motif and structural trees for proteins containing it
    Kargatov, A. M.
    Efimov, A. V.
    [J]. BIOCHEMISTRY-MOSCOW, 2010, 75 (02) : 249 - 256
  • [5] A novel structural motif and structural trees for proteins containing it
    A. M. Kargatov
    A. V. Efimov
    [J]. Biochemistry (Moscow), 2010, 75 : 249 - 256
  • [6] A structural tree for proteins containing S-like β-sheets
    Efimov, AV
    [J]. FEBS LETTERS, 1998, 437 (03) : 246 - 250
  • [7] A structural tree for proteins containing 3 beta-corners
    Efimov, AV
    [J]. FEBS LETTERS, 1997, 407 (01) : 37 - 41
  • [8] A novel structural tree for wrap-proteins, a subclass of (α plus β)-proteins
    Boshkova, Eugenia A.
    Gordeev, Alexey B.
    Efimov, Alexander V.
    [J]. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2014, 32 (02): : 222 - 225
  • [9] TREE STRUCTURAL ORGANIZATION OF PROTEINS
    CRIPPEN, GM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1978, 126 (03) : 315 - 332
  • [10] NOVEL MACROCYCLES CONTAINING PIPERAZINE UNITS
    LARKINS, H
    WILKINSON, S
    HAMILTON, AD
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1984, 188 (AUG): : 184 - ORGN