Interactive analysis and assessment of single-cell copy-number variations

被引:0
|
作者
Tyler Garvin
Robert Aboukhalil
Jude Kendall
Timour Baslan
Gurinder S Atwal
James Hicks
Michael Wigler
Michael C Schatz
机构
[1] Cold Spring Harbor Laboratory,Department of Molecular and Cellular Biology
[2] Stony Brook University,undefined
[3] Present address: Department of Cancer Biology and Genetics,undefined
[4] Memorial Sloan Kettering Cancer Center,undefined
[5] New York,undefined
[6] New York,undefined
[7] USA.,undefined
来源
Nature Methods | 2015年 / 12卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Gingko is an open-source, flexible, comprehensive and user-friendly web tool for analysis of single-cell copy-number variations.
引用
收藏
页码:1058 / 1060
页数:2
相关论文
共 50 条
  • [41] DNA copy number profiling using single-cell sequencing
    Wang, Xuefeng
    Chen, Hao
    Zhang, Nancy R.
    BRIEFINGS IN BIOINFORMATICS, 2018, 19 (05) : 731 - 736
  • [42] Single-cell measurement of plasmid copy number and promoter activity
    Shao, Bin
    Rammohan, Jayan
    Anderson, Daniel A.
    Alperovich, Nina
    Ross, David
    Voigt, Christopher A.
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [43] Single-cell measurement of plasmid copy number and promoter activity
    Bin Shao
    Jayan Rammohan
    Daniel A. Anderson
    Nina Alperovich
    David Ross
    Christopher A. Voigt
    Nature Communications, 12
  • [44] Resolving single-cell copy number profiling for large datasets
    Wang Ruohan
    Zhang Yuwei
    Wang Mengbo
    Feng Xikang
    Wang Jianping
    Li Shuai Cheng
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (04)
  • [45] A pan-cancer single-cell analysis of intratumoral copy number diversity and evolution
    Ye, Hanghui
    McDonald, Thomas
    Sei, Emi
    Minussi, Darlan Conterno
    Hu, Min
    Tang, Chenling
    Wang, Junke
    Wang, Kaile
    Casasent, Anna
    Chen, Hui
    Michor, Franziska
    Navin, Nicholas
    CANCER RESEARCH, 2023, 84 (06)
  • [46] Assessment of megabase-scale somatic copy number variation using single-cell sequencing
    Knouse, Kristin A.
    Wu, Jie
    Amon, Angelika
    GENOME RESEARCH, 2016, 26 (03) : 376 - 384
  • [47] Single-cell analysis of copy-number alterations in serous ovarian cancer reveals substantial heterogeneity in both low- and high-grade tumors
    Kumar, Manonmani
    Bowers, Robert R.
    Delaney, Joe R.
    CELL CYCLE, 2020, 19 (22) : 3154 - 3166
  • [48] SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
    Nicholas Johnson
    Huanan Zhang
    Gang Fang
    Vipin Kumar
    Rui Kuang
    BMC Bioinformatics, 16
  • [49] A copy-number variation detection pipeline for single cell sequencing data on BGI Online
    Huang, Jingying
    Zhou, Yuwen
    Xu, Aodan
    Zhuo, Enhong
    Jin, Xin
    Cai, Hongmin
    2017 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2017, : 243 - 246
  • [50] SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
    Johnson, Nicholas
    Zhang, Huanan
    Fang, Gang
    Kumar, Vipin
    Kuang, Rui
    BMC BIOINFORMATICS, 2015, 16