Alignment-free analysis of barcode sequences by means of compression-based methods

被引：0
|
作者：
Massimo La Rosa
Antonino Fiannaca
Riccardo Rizzo
Alfonso Urso
机构：
[1] National Research Council of Italy,ICAR
来源：
BMC Bioinformatics | / 14卷
关键词：
Similarity Score; Neighbor Join; Unweighted Pair Group Method With Arithmetic; Kolmogorov Complexity; Maximum Composite Likelihood;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Rapid alignment-free phylogenetic identification of metagenomic sequences
    Linard, Benjamin
    Swenson, Krister
    Pardi, Fabio
    BIOINFORMATICS, 2019, 35 (18) : 3303 - 3312
  • [22] INSIDER: alignment-free detection of foreign DNA sequences
    Tay, Aidan P.
    Hosking, Brendan
    Hosking, Cameron
    Bauer, Denis C.
    Wilson, Laurence O. W.
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2021, 19 : 3810 - 3816
  • [23] Genomic Signal Processing Methods for Computation of Alignment-Free Distances from DNA Sequences
    Borrayo, Ernesto
    Gerardo Mendizabal-Ruiz, E.
    Velez-Perez, Hugo
    Romo-Vazquez, Rebeca
    Mendizabal, Adriana P.
    Alejandro Morales, J.
    PLOS ONE, 2014, 9 (11):
  • [24] Classifying the Lifestyle of Metagenomically-Derived Phages Sequences Using Alignment-Free Methods
    Song, Kai
    FRONTIERS IN MICROBIOLOGY, 2020, 11
  • [25] FLR: A Revolutionary Alignment-Free Similarity Analysis Methodology for DNA-Sequences
    Medhat, Belal
    Shawish, Ahmed
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2021, 18 (05) : 1924 - 1936
  • [26] Benchmarking of alignment-free sequence comparison methods
    Zielezinski, Andrzej
    Girgis, Hani Z.
    Bernard, Guillaume
    Leimeister, Chris-Andre
    Tang, Kujin
    Dencker, Thomas
    Lau, Anna Katharina
    Roehling, Sophie
    Choi, Jae Jin
    Waterman, Michael S.
    Comin, Matteo
    Kim, Sung-Hou
    Vinga, Susana
    Almeida, Jonas S.
    Chan, Cheong Xin
    James, Benjamin T.
    Sun, Fengzhu
    Morgenstern, Burkhard
    Karlowski, Wojciech M.
    GENOME BIOLOGY, 2019, 20 (1)
  • [27] Benchmarking of alignment-free sequence comparison methods
    Andrzej Zielezinski
    Hani Z. Girgis
    Guillaume Bernard
    Chris-Andre Leimeister
    Kujin Tang
    Thomas Dencker
    Anna Katharina Lau
    Sophie Röhling
    Jae Jin Choi
    Michael S. Waterman
    Matteo Comin
    Sung-Hou Kim
    Susana Vinga
    Jonas S. Almeida
    Cheong Xin Chan
    Benjamin T. James
    Fengzhu Sun
    Burkhard Morgenstern
    Wojciech M. Karlowski
    Genome Biology, 20
  • [28] Local alignment-free sequences based on D2shepp statistics
    Liu, Xue-Mei
    Wen, De-Hua
    Yu, Huang-Zhong
    Gao, Ya-Ni
    Huanan Ligong Daxue Xuebao/Journal of South China University of Technology (Natural Science), 2012, 40 (08): : 106 - 109
  • [29] Alignment-free Comparison of Protein Sequences Based on Reduced Amino Acid Alphabets
    Jia, Cangzhi
    Liu, Tian
    Zhang, Xiangde
    Fu, Haoyue
    Yang, Qing
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2009, 26 (06): : 763 - 769
  • [30] Editorial: Alignment-free methods in computational biology
    Vinga, Susana
    BRIEFINGS IN BIOINFORMATICS, 2014, 15 (03) : 341 - 342
12345