Mapping DNA methylation with high-throughput nanopore sequencing

被引：0
|
作者：
Arthur C Rand
Miten Jain
Jordan M Eizenga
Audrey Musselman-Brown
Hugh E Olsen
Mark Akeson
Benedict Paten
机构：
[1] University of California,Department of Biomolecular Engineering and Genomics Institute
[2] Santa Cruz,undefined
来源：
Nature Methods | 2017年 / 14卷
关键词：
D O I：
暂无
中图分类号：
学科分类号：
摘要：
A tool based on hidden Markov model and hierarchical Dirichlet process (HMM-HDP) can call two methylated cytosine variants and a methylated adenine variant directly from genomic DNA using nanopore sequencing data.
引用
收藏
页码：411 / 413
页数：2
相关论文
共 50 条
  • [41] Advances in Nanopore and Photoelectron-Based High-Throughput Sequencing Technology for Single-Molecule Sequencing
    Huang, Yunqi
    Lu, Yutong
    Song, Cailing
    Wei, Yican
    Yang, Yuxi
    Ren, Jie
    Wang, Meiling
    Tang, Congli
    Riaz, Aayesha
    Shah, Muhammad Ali
    Deng, Yan
    Liu, Hongna
    Pan, Wenjing
    Li, Song
    JOURNAL OF NANOELECTRONICS AND OPTOELECTRONICS, 2023, 18 (04) : 381 - 395
  • [42] High-throughput nanopore targeted sequencing for efficient drug resistance assay of Mycobacterium tuberculosis
    Tang, Chen
    Wu, Lianpeng
    Li, Machao
    Dai, Jianyi
    Shi, Ye
    Wang, Qiongdan
    Xu, Feng
    Zheng, Laibao
    Xiao, Xingxing
    Cai, Junwen
    Zhang, Yanjun
    Yang, Yuting
    Zheng, Xiaoqun
    Xiang, Guangxin
    FRONTIERS IN MICROBIOLOGY, 2024, 15
  • [43] End-to-End Optimization of High-Throughput DNA Sequencing
    O'Reilly, Eliza
    Baccelli, Francois
    De Veciana, Gustavo
    Vikalo, Haris
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2016, 23 (10) : 789 - 800
  • [44] Commercial high-throughput sequencing and its applications in DNA analysis
    Hai Peng
    Jing Zhang
    Biologia, 2009, 64 : 20 - 26
  • [45] Utility of high-throughput DNA sequencing in the study of the human papillomaviruses
    Noé Escobar-Escamilla
    José Ernesto Ramírez-González
    Graciela Castro-Escarpulli
    José Alberto Díaz-Quiñonez
    Virus Genes, 2018, 54 : 17 - 24
  • [46] High-throughput DNA sequencing technologies for water and wastewater analysis
    Chan, Alexander W. Y.
    Naphtali, James
    Schellhorn, Herb E.
    SCIENCE PROGRESS, 2019, 102 (04) : 351 - 376
  • [47] Commercial high-throughput sequencing and its applications in DNA analysis
    Peng, Hai
    Zhang, Jing
    BIOLOGIA, 2009, 64 (01) : 20 - 26
  • [48] High-throughput DNA sequencing: A genomic data manufacturing process
    Huang, GM
    DNA SEQUENCE, 1999, 10 (03): : 149 - 153
  • [49] Analysis of DNA sequence variants detected by high-throughput sequencing
    Adams, David R.
    Sincan, Murat
    Fajardo, Karin Fuentes
    Mullikin, James C.
    Pierson, Tyler M.
    Toro, Camilo
    Boerkoel, Cornelius F.
    Tifft, Cynthia J.
    Gahl, William A.
    Markello, Tom C.
    HUMAN MUTATION, 2012, 33 (04) : 599 - 608
  • [50] Utility of high-throughput DNA sequencing in the study of the human papillomaviruses
    Escobar-Escamilla, Noe
    Ernesto Ramirez-Gonzalez, Jose
    Castro-Escarpulli, Graciela
    Alberto Diaz-Quinonez, Jose
    VIRUS GENES, 2018, 54 (01) : 17 - 24
12345