Metrics for GO based protein semantic similarity: a systematic evaluation

被引:0
|
作者
Catia Pesquita
Daniel Faria
Hugo Bastos
António EN Ferreira
André O Falcão
Francisco M Couto
机构
[1] Faculdade de Ciências da Universidade de Lisboa,XLDB, Departamento de Informática
[2] Faculdade de Ciências da Universidade de Lisboa,Centro de Química e Bioquímica, Departmento de Química e Bioquimica
来源
关键词
Gene Ontology; Semantic Similarity; Full Dataset; Electronic Annotation; Lower Common Ancestor;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Metrics for GO based protein semantic similarity: a systematic evaluation
    Pesquita, Catia
    Faria, Daniel
    Bastos, Hugo
    Ferreira, Antonio En
    Falcao, Andre O.
    Couto, Francisco M.
    BMC BIOINFORMATICS, 2008, 9 (Suppl 5)
  • [2] GO semantic similarity based analysis for huaman protein interactions
    Chen, Gang
    Wang, Jianxin
    Li, Min
    2009 INTERNATIONAL JOINT CONFERENCE ON BIOINFORMATICS, SYSTEMS BIOLOGY AND INTELLIGENT COMPUTING, PROCEEDINGS, 2009, : 207 - 210
  • [3] GO semantic similarity-based false positive reduction of protein-protein interactions
    Wang, Jianxing
    Dai, Lijian
    Li, Min
    2009 INTERNATIONAL JOINT CONFERENCE ON BIOINFORMATICS, SYSTEMS BIOLOGY AND INTELLIGENT COMPUTING, PROCEEDINGS, 2009, : 211 - 214
  • [4] TANGO: A GO-Term Embedding Based Method for Protein Semantic Similarity Prediction
    Wang, Hongxiao
    Zheng, Hao
    Chen, Danny Z.
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 20 (01) : 694 - 706
  • [5] A measure of semantic similarity between GO terms based on semantic contributions of their ancestors
    Lian, Aie
    Huang, JiFeng
    2009 3RD INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICAL ENGINEERING, VOLS 1-11, 2009, : 266 - 269
  • [6] Analysis of the Impact of Machine Translation Evaluation Metrics for Semantic Textual Similarity
    Magnolini, Simone
    Ngoc Phuoc An Vo
    Popescu, Octavian
    AI*IA 2016: ADVANCES IN ARTIFICIAL INTELLIGENCE, 2016, 10037 : 450 - 463
  • [7] Selection of GO-Based Semantic Similarity Measures through AMDE for Predicting Protein-Protein Interactions
    Mukhopadhyay, Anirban
    De, Moumita
    Maulik, Ujjwal
    SWARM, EVOLUTIONARY, AND MEMETIC COMPUTING, PT II, 2011, 7077 : 55 - +
  • [8] Semantic similarity metrics for image registration
    Czolbe, Steffen
    Pegios, Paraskevas
    Krause, Oswin
    Feragen, Aasa
    MEDICAL IMAGE ANALYSIS, 2023, 87
  • [9] Evaluating Topology-based Metrics for GO Term Similarity Measures
    Jeong, Jong Cheol
    Chen, Xue-wen
    2013 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2013,
  • [10] Exploiting Metrics for Similarity-based Semantic Web Service Discovery
    Dietze, Stefan
    Gugliotta, Alessio
    Domingue, John
    2009 IEEE INTERNATIONAL CONFERENCE ON WEB SERVICES, VOLS 1 AND 2, 2009, : 327 - 334