Computational identification of clonal cells in single-cell CRISPR screens

被引：0
|
作者：
Yihan Wang
Shiqi Xie
Daniel Armendariz
Gary C. Hon
机构：
[1] University of Texas Southwestern Medical Center,Cecil H. and Ida Green Center for Reproductive Biology Sciences
[2] University of Texas Southwestern Medical Center,Department of Bioinformatics, Department of Obstetrics and Gynecology
来源：
BMC Genomics | / 23卷
关键词：
Single-cell CRISPR screens; Single-cell genomics; CRISPR;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing
    Replogle, Joseph M.
    Norman, Thomas M.
    Xu, Albert
    Hussmann, Jeffrey A.
    Chen, Jin
    Cogan, J. Zachery
    Meer, Elliott J.
    Terry, Jessica M.
    Riordan, Daniel P.
    Srinivas, Niranjan
    Fiddes, Ian T.
    Arthur, Joseph G.
    Alvarado, Luigi J.
    Pfeiffer, Katherine A.
    Mikkelsen, Tarjei S.
    Weissman, Jonathan S.
    Adamson, Britt
    [J]. NATURE BIOTECHNOLOGY, 2020, 38 (08) : 954 - +
  • [32] Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors
    Hou, Jiakai
    Liang, Shaoheng
    Xu, Chunyu
    Wei, Yanjun
    Wang, Yunfei
    Tan, Yukun
    Sahni, Nidhi
    McGrail, Daniel J.
    Bernatchez, Chantale
    Davies, Michael
    Li, Yumei
    Chen, Rui
    Yi, S. Stephen
    Chen, Yiwen
    Yee, Cassian
    Chen, Ken
    Peng, Weiyi
    [J]. NAR CANCER, 2022, 4 (04):
  • [33] Systematic dissection of transcriptional regulatory networks by genome-scale and single-cell CRISPR screens
    Lopes, Rui
    Sprouffske, Kathleen
    Sheng, Caibin
    Uijttewaal, Esther C. H.
    Wesdorp, Adriana Emma
    Dahinden, Jan
    Wengert, Simon
    Diaz-Miyar, Juan
    Yildiz, Umut
    Bleu, Melusine
    Apfel, Verena
    Mermet-Meillon, Fanny
    Krese, Rok
    Eder, Mathias
    Olsen, Andre Vidas
    Hoppe, Philipp
    Knehr, Judith
    Carbone, Walter
    Cuttat, Rachel
    Waldt, Annick
    Altorfer, Marc
    Naumann, Ulrike
    Weischenfeldt, Joachim
    DeWeck, Antoine
    Kauffmann, Audrey
    Roma, Guglielmo
    Schubeler, Dirk
    Galli, Giorgio G.
    [J]. SCIENCE ADVANCES, 2021, 7 (27)
  • [34] Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data
    Wolock, Samuel L.
    Lopez, Romain
    Klein, Allon M.
    [J]. CELL SYSTEMS, 2019, 8 (04) : 281 - +
  • [35] Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens
    Celia Alda-Catalinas
    Ximena Ibarra-Soria
    Christina Flouri
    Jorge Esparza Gordillo
    Diana Cousminer
    Anna Hutchinson
    Bin Sun
    William Pembroke
    Sebastian Ullrich
    Adam Krejci
    Adrian Cortes
    Alison Acevedo
    Sunir Malla
    Carl Fishwick
    Gerard Drewes
    Radu Rapiteanu
    [J]. Genome Biology, 25
  • [36] Mapping the functional impact of non-coding regulatory elements in primary T cells through single-cell CRISPR screens
    Alda-Catalinas, Celia
    Ibarra-Soria, Ximena
    Flouri, Christina
    Gordillo, Jorge Esparza
    Cousminer, Diana
    Hutchinson, Anna
    Sun, Bin
    Pembroke, William
    Ullrich, Sebastian
    Krejci, Adam
    Cortes, Adrian
    Acevedo, Alison
    Malla, Sunir
    Fishwick, Carl
    Drewes, Gerard
    Rapiteanu, Radu
    [J]. GENOME BIOLOGY, 2024, 25 (01)
  • [37] Identification of leukemic and pre-leukemic stem cells by clonal tracking from single-cell transcriptomics
    Velten, Lars
    Story, Benjamin A.
    Hernandez-Malmierca, Pablo
    Raffel, Simon
    Leonce, Daniel R.
    Milbank, Jennifer
    Paulsen, Malte
    Demir, Aykut
    Szu-Tu, Chelsea
    Fromel, Robert
    Lutz, Christoph
    Nowak, Daniel
    Jann, Johann-Christoph
    Pabst, Caroline
    Boch, Tobias
    Hofmann, Wolf-Karsten
    Muller-Tidow, Carsten
    Trumpp, Andreas
    Haas, Simon
    Steinmetz, Lars M.
    [J]. NATURE COMMUNICATIONS, 2021, 12 (01)
  • [38] Identification of leukemic and pre-leukemic stem cells by clonal tracking from single-cell transcriptomics
    Lars Velten
    Benjamin A. Story
    Pablo Hernández-Malmierca
    Simon Raffel
    Daniel R. Leonce
    Jennifer Milbank
    Malte Paulsen
    Aykut Demir
    Chelsea Szu-Tu
    Robert Frömel
    Christoph Lutz
    Daniel Nowak
    Johann-Christoph Jann
    Caroline Pabst
    Tobias Boch
    Wolf-Karsten Hofmann
    Carsten Müller-Tidow
    Andreas Trumpp
    Simon Haas
    Lars M. Steinmetz
    [J]. Nature Communications, 12
  • [39] Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq
    Jaitin, Diego Adhemar
    Weiner, Assaf
    Yofe, Ido
    Lara-Astiaso, David
    Keren-Shaul, Hadas
    David, Eyal
    Salame, Tomer Meir
    Tanay, Amos
    van Oudenaarden, Alexander
    Amit, Ido
    [J]. CELL, 2016, 167 (07) : 1883 - +
  • [40] Single-cell heterogeneity analysis and CRISPR screens in MIN6 cell line reveal transcriptional regulators of insulin
    Zhao, Ruxuan
    Lu, Jing
    Li, Qi
    Xiong, Fengran
    Zhang, Yingchao
    Zhu, Juanjuan
    Peng, Gongxin
    Yang, Jinkui
    [J]. CELL CYCLE, 2021, 20 (19) : 2053 - 2065
12345