Genome-wide prediction of cis-regulatory regions using supervised deep learning methods

被引：0
|
作者：
Yifeng Li
Wenqiang Shi
Wyeth W. Wasserman
机构：
[1] University of British Columbia,Centre for Molecular Medicine and Therapeutics, BC Children’s Hospital Research Institute, Department of Medical Genetics
[2] Digital Technologies Research Centre,undefined
[3] National Research Council Canada,undefined
来源：
BMC Bioinformatics | / 19卷
关键词：
-regulatory region; Enhancer; Promoter; Deep learning;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Genome-wide prediction of cis-regulatory regions using supervised deep learning methods
    Li, Yifeng
    Shi, Wenqiang
    Wasserman, Wyeth W.
    BMC BIOINFORMATICS, 2018, 19
  • [2] Genome-wide de novo prediction of cis-regulatory binding sites in prokaryotes
    Zhang, Shaoqiang
    Xu, Minli
    Li, Shan
    Su, Zhengchang
    NUCLEIC ACIDS RESEARCH, 2009, 37 (10)
  • [3] Towards a genome-wide reconstruction of cis-regulatory networks in the human genome
    Cecchini, Katharine R.
    Banerjee, A. Raja
    Kim, Tae Hoon
    SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY, 2009, 20 (07) : 842 - 848
  • [4] Genome-wide profiling of angiogenic cis-regulatory elements unravels cis-regulatory SNPs for vascular abnormality
    Jin, Lihui
    Han, Zhenyuan
    Mao, Xiaotong
    Lu, Jieru
    Yan, Bingqian
    Lu, Yiwen
    Liang, Lili
    Wang, Lin
    Yu, Yu
    Sun, Kun
    SCIENTIFIC DATA, 2024, 11 (01)
  • [5] INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction
    Gonzalo Parra, R.
    Rohr, Cristian O.
    Koile, Daniel
    Perez-Castro, Carolina
    Yankilevich, Patricio
    BIOINFORMATICS, 2016, 32 (08) : 1229 - 1231
  • [6] CisMiner: Genome-Wide In-Silico Cis-Regulatory Module Prediction by Fuzzy Itemset Mining
    Navarro, Carmen
    Lopez, Francisco J.
    Cano, Carlos
    Garcia-Alcalde, Fernando
    Blanco, Armando
    PLOS ONE, 2014, 9 (09):
  • [7] Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme
    Kiekens, Raphael
    Vercauteren, Annelies
    Moerkerke, Beatrijs
    Goetghebeur, Els
    Van den Daele, Hilde
    Sterken, Roel
    Kuiper, Martin
    van Eeuwijk, Fred
    Vuylsteke, Marnik
    NUCLEIC ACIDS RESEARCH, 2006, 34 (13) : 3677 - 3686
  • [8] PReMod:: a database of genome-wide mammalian cis-regulatory module predictions
    Ferretti, Vincent
    Poitras, Christian
    Bergeron, Dominique
    Coulombe, Benoit
    Robert, Francois
    Blanchette, Mathieu
    NUCLEIC ACIDS RESEARCH, 2007, 35 : D122 - D126
  • [9] Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
    Sinha, S
    Schroeder, MD
    Unnerstall, U
    Gaul, U
    Siggia, ED
    BMC BIOINFORMATICS, 2004, 5 (1)
  • [10] Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
    Saurabh Sinha
    Mark D Schroeder
    Ulrich Unnerstall
    Ulrike Gaul
    Eric D Siggia
    BMC Bioinformatics, 5
12345