Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: Prediction and validation

被引:0
|
作者
Moumita Datta
Ananyo Choudhury
Ansuman Lahiri
Nitai P Bhattacharyya
机构
[1] Saha Institute of Nuclear Physics,Crystallography and Molecular Biology Division
[2] University of Calcutta,Department of Biophysics, Molecular Biology and Bioinformatics
[3] University of the Witwatersrand,Wits Bioinformatics
[4] Johannesburg,undefined
来源
BMC Genomics | / 12卷
关键词
Gene Ontology; HeLa Cell; Upstream Sequence; Neuro2A Cell; CREB Binding Protein;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Genome-wide prediction of DNase I hypersensitivity using gene expression
    Zhou, Weiqiang
    Sherwood, Ben
    Ji, Zhicheng
    Xue, Yingchao
    Du, Fang
    Bai, Jiawei
    Ying, Mingyao
    Ji, Hongkai
    NATURE COMMUNICATIONS, 2017, 8
  • [22] Genome-wide analysis of the genetic regulation of gene expression in human neutrophils
    Andiappan, Anand Kumar
    Melchiotti, Rossella
    Poh, Tuang Yeow
    Nah, Michelle
    Puan, Kia Joo
    Vigano, Elena
    Haase, Doreen
    Yusof, Nurhashikin
    Luis, Boris San
    Lum, Josephine
    Kumar, Dilip
    Foo, Shihui
    Zhuang, Li
    Vasudev, Anusha
    Irwanto, Astrid
    Lee, Bernett
    Nardin, Alessandra
    Liu, Hong
    Zhang, Furen
    Connolly, John
    Liu, Jianjun
    Mortellaro, Alessandra
    Wang, De Yun
    Poidinger, Michael
    Larbi, Anis
    Zolezzi, Francesca
    Rotzschke, Olaf
    NATURE COMMUNICATIONS, 2015, 6
  • [23] Genome-wide prediction of DNase I hypersensitivity using gene expression
    Weiqiang Zhou
    Ben Sherwood
    Zhicheng Ji
    Yingchao Xue
    Fang Du
    Jiawei Bai
    Mingyao Ying
    Hongkai Ji
    Nature Communications, 8
  • [24] Genome-wide analysis of the genetic regulation of gene expression in human neutrophils
    Anand Kumar Andiappan
    Rossella Melchiotti
    Tuang Yeow Poh
    Michelle Nah
    Kia Joo Puan
    Elena Vigano
    Doreen Haase
    Nurhashikin Yusof
    Boris San Luis
    Josephine Lum
    Dilip Kumar
    Shihui Foo
    Li Zhuang
    Anusha Vasudev
    Astrid Irwanto
    Bernett Lee
    Alessandra Nardin
    Hong Liu
    Furen Zhang
    John Connolly
    Jianjun Liu
    Alessandra Mortellaro
    De Yun Wang
    Michael Poidinger
    Anis Larbi
    Francesca Zolezzi
    Olaf Rotzschke
    Nature Communications, 6
  • [25] Genome-wide Prediction and Functional Validation of Promoter Motifs Regulating Gene Expression in Spore and Infection Stages of Phytophthora infestans
    Roy, Sourav
    Kagda, Meenakshi
    Judelson, Howard S.
    PLOS PATHOGENS, 2013, 9 (03)
  • [26] Deficiency of the Endocytic Protein Hip1 Leads to Decreased Gdpd3 Expression, Low Phosphocholine, and Kypholordosis
    Wijayatunge, Ranjula
    Holmstrom, Sam R.
    Foley, Samantha B.
    Mgbemena, Victoria E.
    Bhargava, Varsha
    Perez, Gerardo Lopez
    McCrum, Kelly
    Ross, Theodora S.
    MOLECULAR AND CELLULAR BIOLOGY, 2018, 38 (23)
  • [27] Genome-Wide Analysis of Gene and Protein Expression of Dysplastic Naevus Cells
    Gao, Linda
    van Nieuwpoort, Frans A.
    Out-Luiting, Jacoba J.
    Hensbergen, Paul J.
    de Snoo, Femke A.
    Bergman, Wilma
    van Doorn, Remco
    Gruis, Nelleke A.
    JOURNAL OF SKIN CANCER, 2012, 2012
  • [28] Interactions of HIPPI, a molecular partner of Huntingtin interacting protein HIP1, with the specific motif present at the putative promoter sequence of the caspase-1, caspase-8 and caspase-10 genes
    Majumder, P.
    Choudhury, A.
    Banerjee, M.
    Lahiri, A.
    Bhattacharyya, N. P.
    FEBS JOURNAL, 2007, 274 (15) : 3886 - 3899
  • [29] Creation of genome-wide protein expression libraries using random activation of gene expression
    Harrington, JJ
    Sherf, B
    Rundlett, S
    Jackson, PD
    Perry, R
    Cain, S
    Leventhal, C
    Thornton, M
    Ramachandran, R
    Whittington, J
    Lerner, L
    Costanzo, D
    McElligott, K
    Boozer, S
    Mays, R
    Smith, E
    Veloso, N
    Klika, A
    Hess, J
    Cothren, K
    Lo, K
    Offenbacher, J
    Danzig, J
    Ducar, M
    NATURE BIOTECHNOLOGY, 2001, 19 (05) : 440 - 445
  • [30] Creation of genome-wide protein expression libraries using random activation of gene expression
    John J. Harrington
    Bruce Sherf
    Stephen Rundlett
    P. David Jackson
    Rob Perry
    Scott Cain
    Christina Leventhal
    Mark Thornton
    Rakesh Ramachandran
    Jessica Whittington
    Laura Lerner
    Dana Costanzo
    Karen McElligott
    Sherry Boozer
    Robert Mays
    Emery Smith
    Neil Veloso
    Alison Klika
    Jennifer Hess
    Kevin Cothren
    Kalok Lo
    Jason Offenbacher
    Joel Danzig
    Matt Ducar
    Nature Biotechnology, 2001, 19 : 440 - 445