metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

被引：0
|
作者：
Christina Ander
Ole B Schulz-Trieglaff
Jens Stoye
Anthony J Cox
机构：
[1] Bielefeld University,Genome Informatics, Faculty of Technology and CeBiTec
[2] Chesterford Research Park,Computational Biology Group, Illumina Cambridge Ltd.
来源：
BMC Bioinformatics | / 14卷
关键词：
Suffix; Taxonomic Classification; Copy Number Change; Human Microbiome Project; Suffix Array;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
Environmental shotgun sequencing (ESS) has potential to give greater insight into microbial communities than targeted sequencing of 16S regions, but requires much higher sequence coverage. The advent of next-generation sequencing has made it feasible for the Human Microbiome Project and other initiatives to generate ESS data on a large scale, but computationally efficient methods for analysing such data sets are needed.
引用
收藏
相关论文
共 50 条
  • [31] Enabling high-throughput experimentation through high-throughput analysis
    Schafer, Wes
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 252
  • [32] Frequency-swept HMQC sequences for high-throughput NMR analysis
    Spitzer, Timothy D.
    Rutkowske, Randy D.
    Dorsey, George F., Jr.
    MAGNETIC RESONANCE IN CHEMISTRY, 2008, 46 (06) : 558 - 563
  • [33] Algorithm for High-Throughput Scheduling of Paced Sequences
    Bader, Alexander
    Kipry, Niklas
    Logers, Frederik
    Tracht, Kirsten
    SUSTAINABLE MANUFACTURING - HAND IN HAND TO SUSTAINABILITY ON GLOBE, 2020, 43 : 223 - 230
  • [34] From low- to high-throughput analysis
    Levesque, Ann
    Gagnon-Carignan, Sofi
    Lachance, Sylvain
    BIOANALYSIS, 2016, 8 (02) : 135 - 141
  • [35] Enrichment of nitrifying bacteria and microbial diversity analysis by high-throughput sequencing
    Yao, Renda
    Yang, Hong
    Yu, Mengyu
    Liu, Yi
    Shi, Huan
    RSC ADVANCES, 2016, 6 (115): : 113959 - 113966
  • [36] High-Throughput Sequence Analysis of Microbial Communities of Soybean in Northeast China
    Wang, Yuanyuan
    Bai, Qingyao
    Meng, Fanqi
    Dong, Wei
    Fan, Haiyan
    Zhu, Xiaofeng
    Duan, Yuxi
    Chen, Lijie
    AGRONOMY-BASEL, 2025, 15 (02):
  • [37] Analysis of Microbial Community Diversity of Crab Paste by High-Throughput Sequencing
    Li, Cheng
    Kong, Xiaoxue
    Yu, Jubo
    Zou, Xiaoqian
    Luo, Haibo
    Shipin Kexue/Food Science, 2020, 41 (04): : 134 - 139
  • [38] Analysis of Microbial Diversity in Incision of Flowering Cabbage by High-throughput Sequencing
    Jia Z.
    Chen X.
    Fan C.
    Mei X.
    Shi J.
    Sui Y.
    Cai S.
    Xiong T.
    He J.
    Shipin Kexue/Food Science, 2022, 43 (10): : 150 - 155
  • [39] High-throughput fuzzy clustering on heterogeneous architectures
    Cebrian, Juan M.
    Imbernon, Baldomero
    Soto, Jesus
    Garcia, Jose M.
    Cecilia, Jose M.
    FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2020, 106 : 401 - 411
  • [40] Automated high-throughput probe production for DNA microarray analysis
    Hoyt, PR
    Tack, L
    Jones, BH
    Van Dinther, J
    Staat, S
    Doktycz, MJ
    BIOTECHNIQUES, 2003, 34 (02) : 402 - 407
12345