De novo assembly and analysis of RNA-seq data

被引:0
|
作者
Gordon Robertson
Jacqueline Schein
Readman Chiu
Richard Corbett
Matthew Field
Shaun D Jackman
Karen Mungall
Sam Lee
Hisanaga Mark Okada
Jenny Q Qian
Malachi Griffith
Anthony Raymond
Nina Thiessen
Timothee Cezard
Yaron S Butterfield
Richard Newsome
Simon K Chan
Rong She
Richard Varhol
Baljit Kamoh
Anna-Liisa Prabhu
Angela Tam
YongJun Zhao
Richard A Moore
Martin Hirst
Marco A Marra
Steven J M Jones
Pamela A Hoodless
Inanc Birol
机构
[1] Canada's Michael Smith Genome Sciences Centre,Department of Medical Genetics
[2] British Columbia Cancer Agency,undefined
[3] Terry Fox Laboratory,undefined
[4] British Columbia Cancer Agency,undefined
[5] University of British Columbia,undefined
[6] Present address: University of Edinburgh,undefined
[7] Edinburgh,undefined
[8] UK.,undefined
来源
Nature Methods | 2010年 / 7卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
The Trans-ABySS pipeline is an integrated approach for transcript assembly and analysis to identify new mRNA isoforms and structures.
引用
收藏
页码:909 / 912
页数:3
相关论文
共 50 条
  • [31] Identification of alternative oxidase encoding genes in Caulerpa cylindracea by de novo RNA-Seq assembly analysis
    Unlu, Ercan Selcuk
    Unuvar, Omer Can
    Aydin, Meryem
    [J]. MARINE GENOMICS, 2019, 46 : 41 - 48
  • [32] RNA-Seq Analysis Using De Novo Transcriptome Assembly as a Reference for the Salmon Louse Caligus rogercresseyi
    Gallardo-Escarate, Cristian
    Valenzuela-Munoz, Valentina
    Nunez-Acuna, Gustavo
    [J]. PLOS ONE, 2014, 9 (04):
  • [33] SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
    Xie, Yinlong
    Wu, Gengxiong
    Tang, Jingbo
    Luo, Ruibang
    Patterson, Jordan
    Liu, Shanlin
    Huang, Weihua
    He, Guangzhu
    Gu, Shengchang
    Li, Shengkang
    Zhou, Xin
    Lam, Tak-Wah
    Li, Yingrui
    Xu, Xun
    Wong, Gane Ka-Shu
    Wang, Jun
    [J]. BIOINFORMATICS, 2014, 30 (12) : 1660 - 1666
  • [34] Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data
    Livernois, Alexandra
    Hardy, Kristine
    Domaschenz, Renae
    Papanicolaou, Alexie
    Georges, Arthur
    Sarre, Stephen D.
    Rao, Sudha
    Ezaz, Tariq
    Deakin, Janine E.
    [J]. IMMUNOGENETICS, 2016, 68 (09) : 719 - 731
  • [35] IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads
    Zhao, Jin
    Feng, Haodi
    Zhu, Daming
    Zhang, Chi
    Xu, Ying
    [J]. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 17 (03) : 938 - 948
  • [36] De Novo Assembly and Characterization of Oryza officinalis Leaf Transcriptome by Using RNA-Seq
    Bao, Ying
    Xu, Si
    Jing, Xiang
    Meng, Lu
    Qin, Zongyan
    [J]. BIOMED RESEARCH INTERNATIONAL, 2015, 2015
  • [37] Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data
    Jialei Duan
    Chuan Xia
    Guangyao Zhao
    Jizeng Jia
    Xiuying Kong
    [J]. BMC Genomics, 13
  • [38] Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
    Qiong-Yi Zhao
    Yi Wang
    Yi-Meng Kong
    Da Luo
    Xuan Li
    Pei Hao
    [J]. BMC Bioinformatics, 12
  • [39] Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
    Zhao, Qiong-Yi
    Wang, Yi
    Kong, Yi-Meng
    Luo, Da
    Li, Xuan
    Hao, Pei
    [J]. BMC BIOINFORMATICS, 2011, 12 : S2
  • [40] Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data
    Alexandra Livernois
    Kristine Hardy
    Renae Domaschenz
    Alexie Papanicolaou
    Arthur Georges
    Stephen D Sarre
    Sudha Rao
    Tariq Ezaz
    Janine E Deakin
    [J]. Immunogenetics, 2016, 68 : 719 - 731