A gene profiling deconvolution approach to estimating immune cell composition from complex tissues

被引:0
|
作者
Shu-Hwa Chen
Wen-Yu Kuo
Sheng-Yao Su
Wei-Chun Chung
Jen-Ming Ho
Henry Horng-Shing Lu
Chung-Yen Lin
机构
[1] Institute of Information Science,Bioinformatics Program, Taiwan International Graduate Program
[2] Academia Sinica,Division of Biostatistics and Bioinformatics
[3] Institute of Statistics,undefined
[4] National Chiao Tung University,undefined
[5] Institute of Information Science,undefined
[6] Academia Sinica,undefined
[7] Institute of Biomedical Informatics,undefined
[8] National Yang-Ming University,undefined
[9] Institute of Population Health Sciences,undefined
[10] National Health Research Institutes,undefined
[11] Institute of Fisheries Science,undefined
[12] College of Life Science,undefined
[13] National Taiwan University,undefined
来源
关键词
Tumor-infiltrating Lymphocytes Populations (TILs); Gene Expression Deconvolution; Immune Cell Types; Significant Matrix; Profile Gene Expression Patterns;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] Cell-type specific polysome profiling from mammalian tissues
    Seimetz, Joseph
    Arif, Waqar
    Bangru, Sushant
    Hernaez, Mikel
    Kalsotra, Auinash
    METHODS, 2019, 155 : 131 - 139
  • [42] Detection of Cell Separation-Induced Gene Expression Through a Penalized Deconvolution Approach
    An-Shun Tai
    Chun-Chao Wang
    Wen-Ping Hsieh
    Statistics in Biosciences, 2023, 15 : 692 - 718
  • [43] Detection of Cell Separation-Induced Gene Expression Through a Penalized Deconvolution Approach
    Tai, An-Shun
    Wang, Chun-Chao
    Hsieh, Wen-Ping
    STATISTICS IN BIOSCIENCES, 2023, 15 (03) : 692 - 718
  • [44] Expression profiling and validation of reference gene candidates in immune relevant tissues and cells from Atlantic salmon (Salmo salar L.)
    Ingerslev, HC
    Pettersen, EF
    Jakobsen, RA
    Petersen, CB
    Wergeland, HI
    MOLECULAR IMMUNOLOGY, 2006, 43 (08) : 1194 - 1201
  • [45] Immune cell profiling of wounds from Epidermolysis bullosa patients
    Fuentes, I.
    Guttmann-Gruber, C.
    Hofbauer, J. Pinon
    South, A.
    JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2019, 139 (09) : S327 - S327
  • [46] IMMUNE PROFILING BY RNA-SEQ DECONVOLUTION AND SINGLE-CELL SEQUENCING REVEAL MYELOID CELL ENRICHMENT IN DIPG TUMOR MICROENVIRONMENT
    Zhu, Xiaoting
    Mishra, Deepak
    Kumar, Shiva Senthil
    McHugh, Todd
    Lazow, Margot
    Fouladi, Maryam
    Drissi, Rachid
    NEURO-ONCOLOGY, 2022, 24 : 20 - 20
  • [47] IMMUNE CELL PROFILING OF WOUNDS FROM EPIDERMOLYSIS BULLOSA PATIENTS
    Fuentes, Ignacia
    Guttmann-Gruber, Christina
    Tockner, Birgit
    Diem, Anja
    Klausegger, Alfred
    Cofre-Araneda, Glenda
    Figuera, Olga
    Hidalgo, Yessia
    Morande, Pilar
    Palisson, Francis
    Rebolledo-Jaramillo, Boris
    Yubero, Maria Joao
    Cho, Raymond J.
    Rishel, Heather I.
    Marinkovich, M. Peter
    Teng, Joyce
    Webster, Timothy G.
    Prisco, Marco
    Eraso, Luis H.
    Hofbauer, Josefina Pinon
    South, Andrew P.
    ACTA DERMATO-VENEREOLOGICA, 2020, 100 : 46 - 46
  • [48] MicroRNA profiling of platelets from immune thrombocytopenia and target gene prediction
    Deng, Gang
    Yu, Shifang
    He, Yunlei
    Sun, Tao
    Liang, Wei
    Yu, Lu
    Xu, Deyi
    Li, Qiang
    Zhang, Ri
    MOLECULAR MEDICINE REPORTS, 2017, 16 (03) : 2835 - 2843
  • [49] Estimating cell type composition using isoform expression one gene at a time
    Heiling, Hillary M.
    Wilson, Douglas R.
    Rashid, Naim U.
    Sun, Wei
    Ibrahim, Joseph G.
    BIOMETRICS, 2023, 79 (02) : 854 - 865
  • [50] lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression
    Sean K. Maden
    Louise A. Huuki-Myers
    Sang Ho Kwon
    Leonardo Collado-Torres
    Kristen R. Maynard
    Stephanie C. Hicks
    BMC Genomics, 26 (1)