PACSY, a relational database management system for protein structure and chemical shift analysis

被引：0
|
作者：
Woonghee Lee
Wookyung Yu
Suhkmann Kim
Iksoo Chang
Weontae Lee
John L. Markley
机构：
[1] University of Wisconsin-Madison,National Magnetic Resonance Facility at Madison, and Biochemistry Department
[2] Yonsei University,Structural Biochemistry and Molecular Biophysics Laboratory, Department of Biochemistry
[3] Center for Proteome Biophysics,Department of Physics
[4] Pusan National University,Department of Chemistry and Chemistry Institute for Functional Materials
[5] Pusan National University,undefined
来源：
Journal of Biomolecular NMR | 2012年 / 54卷
关键词：
PACSY; NMR; PDB; BMRB; SCOP; Database; Structural biology; Bioinformatics;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
PACSY (Protein structure And Chemical Shift NMR spectroscopY) is a relational database management system that integrates information from the Protein Data Bank, the Biological Magnetic Resonance Data Bank, and the Structural Classification of Proteins database. PACSY provides three-dimensional coordinates and chemical shifts of atoms along with derived information such as torsion angles, solvent accessible surface areas, and hydrophobicity scales. PACSY consists of six relational table types linked to one another for coherence by key identification numbers. Database queries are enabled by advanced search functions supported by an RDBMS server such as MySQL or PostgreSQL. PACSY enables users to search for combinations of information from different database sources in support of their research. Two software packages, PACSY Maker for database creation and PACSY Analyzer for database analysis, are available from http://pacsy.nmrfam.wisc.edu.
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页码：169 / 179
页数：10
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