A map of the cis-regulatory sequences in the mouse genome

被引:0
|
作者
Yin Shen
Feng Yue
David F. McCleary
Zhen Ye
Lee Edsall
Samantha Kuan
Ulrich Wagner
Jesse Dixon
Leonard Lee
Victor V. Lobanenkov
Bing Ren
机构
[1] Ludwig Institute for Cancer Research,Department of Cellular and Molecular Medicine
[2] 9500 Gilman Drive,undefined
[3] La Jolla,undefined
[4] California 92093-0653,undefined
[5] USA ,undefined
[6] Medical Scientist Training Program,undefined
[7] University of California,undefined
[8] San Diego School of Medicine,undefined
[9] 9500 Gilman Drive,undefined
[10] La Jolla,undefined
[11] California 92093-0653,undefined
[12] USA ,undefined
[13] Biomedical Sciences Graduate Program,undefined
[14] University of California,undefined
[15] San Diego School of Medicine,undefined
[16] 9500 Gilman Drive,undefined
[17] La Jolla,undefined
[18] California 92093-0653,undefined
[19] USA ,undefined
[20] Laboratory of Immunogenetics,undefined
[21] National Institute of Allergy and Infectious Diseases,undefined
[22] Twinbrook I NIAID Facility,undefined
[23] Room 1417,undefined
[24] 5640 Fishers Lane,undefined
[25] Rockville,undefined
[26] Maryland 20852,undefined
[27] USA ,undefined
[28] Institute of Genomic Medicine,undefined
[29] Moores Cancer Center,undefined
[30] University of California,undefined
[31] San Diego School of Medicine,undefined
[32] 9500 Gilman Drive,undefined
[33] La Jolla,undefined
[34] California 92093-0653,undefined
[35] USA,undefined
来源
Nature | 2012年 / 488卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
A genomic map of nearly 300,000 potential cis-regulatory sequences determined from diverse mouse tissues and cell types reveals active promoters, enhancers and CCCTC-binding factor sites encompassing 11% of the mouse genome and significantly expands annotation of mammalian regulatory sequences.
引用
收藏
页码:116 / 120
页数:4
相关论文
共 50 条
  • [31] Ancient cis-regulatory constraints and the evolution of genome architecture
    Irimia, Manuel
    Maeso, Ignacio
    Roy, Scott W.
    Fraser, Hunter B.
    TRENDS IN GENETICS, 2013, 29 (09) : 521 - 528
  • [32] Identification of Functional cis-regulatory Polymorphisms in the Human Genome
    Molineris, Ivan
    Schiavone, Davide
    Rosa, Fabio
    Matullo, Giuseppe
    Poli, Valeria
    Provero, Paolo
    HUMAN MUTATION, 2013, 34 (05) : 735 - 742
  • [33] CREME:: Cis-Regulatory Module Explorer for the human genome
    Sharan, R
    Ben-Hur, A
    Loots, GG
    Ovcharenko, I
    NUCLEIC ACIDS RESEARCH, 2004, 32 : W253 - W256
  • [34] Genome surveyor 2.0: cis-regulatory analysis in Drosophila
    Kazemian, Majid
    Brodsky, Michael H.
    Sinha, Saurabh
    NUCLEIC ACIDS RESEARCH, 2011, 39 : W79 - W85
  • [35] Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse
    Kantorovitz, Miriam R.
    Kazemian, Majid
    Kinston, Sarah
    Miranda-Saavedra, Diego
    Zhu, Qiyun
    Robinson, Gene E.
    Goettgens, Berthold
    Halfon, Marc S.
    Sinha, Saurabh
    DEVELOPMENTAL CELL, 2009, 17 (04) : 568 - 579
  • [36] Mapping cis-regulatory elements in the midgestation mouse placenta
    Rebekah R. Starks
    Haninder Kaur
    Geetu Tuteja
    Scientific Reports, 11
  • [37] Mapping cis-regulatory elements in the midgestation mouse placenta
    Starks, Rebekah R.
    Kaur, Haninder
    Tuteja, Geetu
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [38] Cis-regulatory sequences in plants: Their importance, discovery, and future challenges
    Schmitz, Robert J.
    Grotewold, Erich
    Stam, Maike
    PLANT CELL, 2022, 34 (02): : 718 - 741
  • [39] An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome
    Won, Kyoung-Jae
    Agarwal, Saurabh
    Shen, Li
    Shoemaker, Robert
    Ren, Bing
    Wang, Wei
    PLOS ONE, 2009, 4 (05):
  • [40] Hold out the genome: a roadmap to solving the cis-regulatory code
    Carl G. de Boer
    Jussi Taipale
    Nature, 2024, 625 : 41 - 50