Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size

被引:0
|
作者
John R. Shorter
Wei Huang
Ju Youn Beak
Kunjie Hua
Daniel M. Gatti
Fernando Pardo-Manuel de Villena
Daniel Pomp
Brian C. Jensen
机构
[1] University of North Carolina,Department of Genetics
[2] University of North Carolina,Lineberger Comprehensive Cancer Center
[3] University of North Carolina,Division of Cardiology, Department of Medicine
[4] The Jackson Laboratory,Department of Pharmacology
[5] University of North Carolina,McAllister Heart Institute
[6] University of North Carolina,undefined
来源
Mammalian Genome | 2018年 / 29卷
关键词
Larger Heart Size; Diversity Outbred; Heart Weight Index; Pathological Cardiac Hypertrophy; High-resolution Association Mapping;
D O I
暂无
中图分类号
学科分类号
摘要
Heart size is an important factor in cardiac health and disease. In particular, increased heart weight is predictive of adverse cardiovascular outcomes in multiple large community-based studies. We use two cohorts of Diversity Outbred (DO) mice to investigate the role of genetics, sex, age, and diet on heart size. DO mice (n = 289) of both sexes from generation 10 were fed a standard chow diet, and analyzed at 12–15 weeks of age. Another cohort of female DO mice (n = 258) from generation 11 were fed either a high-fat, cholesterol-containing (HFC) diet or a low-fat, high-protein diet, and analyzed at 24–25 weeks. We did not observe an effect of diet on body or heart weight in generation 11 mice, although we previously reported an effect on other cardiovascular risk factors, including cholesterol, triglycerides, and insulin. We do observe a significant genetic effect on heart weight in this population. We identified two quantitative trait loci for heart weight, one (Hwtf1) at a genome-wide significance level of p ≤ 0.05 on MMU15 and one (Hwtf2) at a genome-wide suggestive level of p ≤ 0.1 on MMU10, that together explain 13.3% of the phenotypic variance. Hwtf1 contained collagen type XXII alpha 1 chain (Col22a1), and the NZO/HlLtJ and WSB/EiJ haplotypes were associated with larger hearts. This is consistent with heart tissue Col22a1 expression in DO founders and SNP patterns within Hwtf1 for Col22a1. Col22a1 has been previously associated with cardiac fibrosis in mice, suggesting that Col22a1 may be involved in pathological cardiac hypertrophy.
引用
收藏
页码:80 / 89
页数:9
相关论文
共 50 条
  • [31] A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash
    Gregory Vogel
    Kyle E. LaPlant
    Michael Mazourek
    Michael A. Gore
    Christine D. Smart
    Theoretical and Applied Genetics, 2021, 134 : 1015 - 1031
  • [32] Quantitative Trait Locus Analysis Identifies Rat Genomic Regions Related to Amphetamine-Induced Locomotion and Gαi3 Levels in Nucleus Accumbens
    Marc N Potenza
    Edward S Brodkin
    Bao-Zhu Yang
    Shari G Birnbaum
    Eric J Nestler
    Joel Gelernter
    Neuropsychopharmacology, 2008, 33 : 2735 - 2746
  • [33] A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash
    Vogel, Gregory
    LaPlant, Kyle E.
    Mazourek, Michael
    Gore, Michael A.
    Smart, Christine D.
    THEORETICAL AND APPLIED GENETICS, 2021, 134 (04) : 1015 - 1031
  • [34] Quantitative trait locus analysis identifies rat genomic regions related to amphetamine-induced locomotion and Gαi3 levels in nucleus accumbens
    Potenza, Marc N.
    Brodkin, Edward S.
    Yang, Bao-Zhu
    Birnbaum, Shari G.
    Nestler, Eric J.
    Gelernter, Joel
    NEUROPSYCHOPHARMACOLOGY, 2008, 33 (11) : 2735 - 2746
  • [35] Fine mapping of two quantitative trait loci for ethanol physical dependence and associated withdrawal on mouse chromosome 1.
    Kozell, L. B.
    Belknap, J. K.
    Mayeda, A.
    Buck, K. J.
    ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH, 2006, 30 (06) : 25A - 25A
  • [36] Prospects of Fine-Mapping Trait-Associated Genomic Regions by Using Summary Statistics from Genome-wide Association Studies
    Benner, Christian
    Havulinna, Aki S.
    Jarvelin, Marjo-Riitta
    Salomaa, Veikko
    Ripatti, Samuli
    Pirinen, Matti
    AMERICAN JOURNAL OF HUMAN GENETICS, 2017, 101 (04) : 539 - 551
  • [37] Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations
    Silva, Rafael M. O.
    Evenhuis, Jason P.
    Vallejo, Roger L.
    Gao, Guangtu
    Martin, Kyle E.
    Leeds, Tim D.
    Palti, Yniv
    Lourenco, Daniela A. L.
    GENETICS SELECTION EVOLUTION, 2019, 51 (01)
  • [38] Whole-genome mapping of quantitative trait loci and accuracy of genomic predictions for resistance to columnaris disease in two rainbow trout breeding populations
    Rafael M. O. Silva
    Jason P. Evenhuis
    Roger L. Vallejo
    Guangtu Gao
    Kyle E. Martin
    Tim D. Leeds
    Yniv Palti
    Daniela A. L. Lourenco
    Genetics Selection Evolution, 51
  • [39] QTL mapping in tropical maize:: III.: Genomic regions for resistance to Diatraea spp and associated traits in two RIL populations
    Groh, S
    González-de-León, D
    Khairallah, MM
    Jiang, C
    Bergvinson, D
    Bohn, M
    Hoisington, DA
    Melchinger, AE
    CROP SCIENCE, 1998, 38 (04) : 1062 - 1072
  • [40] Substitution mapping in Dahl rats identifies two distinct blood pressure quantitative trait loci within 1.12- and 1.25-Mb intervals on chromosome 3
    Lee, Soon Jin
    Liu, Jun
    Westcott, Allison M.
    Vieth, Joshua A.
    DeRaedt, Sarah J.
    Yang, Siming
    Joe, Bina
    Cicila, George T.
    GENETICS, 2006, 174 (04) : 2203 - 2213