The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes

被引:0
|
作者
James C Estill
Jeffrey L Bennetzen
机构
[1] Department of Plant Biology,
[2] The University of Georgia,undefined
[3] Department of Genetics,undefined
[4] The University of Georgia,undefined
来源
关键词
Bacterial Artificial Chromosome; Transposable Element; Configuration File; Glyph; Euler Diagram;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] Transposable elements and the evolution of eukaryotic genomes
    Wessler, Susan R.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (47) : 17600 - 17601
  • [22] AnnoSINE: a short interspersed nuclear elements annotation tool for plant genomes
    Li, Yang
    Jiang, Ning
    Sun, Yanni
    [J]. PLANT PHYSIOLOGY, 2022, 188 (02) : 955 - 970
  • [23] Plant transposable elements
    Kunze, R
    Saedler, H
    Lonnig, WE
    [J]. ADVANCES IN BOTANICAL RESEARCH, VOL 27: CLASSIC PAPERS, 1997, 27 : 331 - 470
  • [24] PLANT TRANSPOSABLE ELEMENTS
    DORING, HP
    [J]. BIOESSAYS, 1985, 3 (04) : 164 - +
  • [25] PLANT TRANSPOSABLE ELEMENTS
    NEVERS, P
    SHEPHERD, NS
    SAEDLER, H
    [J]. ADVANCES IN BOTANICAL RESEARCH, 1986, 12 : 103 - 203
  • [26] ChimeraTE: a pipeline to detect chimeric transcripts derived from genes and transposable elements
    Oliveira, Daniel S.
    Fablet, Marie
    Larue, Anais
    Vallier, Agnes
    Carareto, Claudia M. A.
    Rebollo, Rita
    Vieira, Cristina
    [J]. NUCLEIC ACIDS RESEARCH, 2023, 51 (18) : 9764 - 9784
  • [27] A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
    Jérémy Berthelier
    Nathalie Casse
    Nicolas Daccord
    Véronique Jamilloux
    Bruno Saint-Jean
    Grégory Carrier
    [J]. BMC Genomics, 19
  • [28] A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
    Berthelier, Jeremy
    Casse, Nathalie
    Daccord, Nicolas
    Jamilloux, Veronique
    Saint-Jean, Bruno
    Carrier, Gregory
    [J]. BMC GENOMICS, 2018, 19
  • [29] Transposable Elements in Reptilian and Avian (Sauropsida) Genomes
    Kordis, D.
    [J]. CYTOGENETIC AND GENOME RESEARCH, 2009, 127 (2-4) : 94 - 111
  • [30] The genomes and transposable elements in plants: are they friends or foes?
    Kim, Nam-Soo
    [J]. GENES & GENOMICS, 2017, 39 (04) : 359 - 370