Machine learning predicts nucleosome binding modes of transcription factors

被引：0
|
作者：
K. C. Kishan
Sridevi K. Subramanya
Rui Li
Feng Cui
机构：
[1] Rochester Institute of Technology,Thomas H. Gosnell School of Life Sciences
[2] Rochester Institute of Technology,Golisano College of Computing and Information Sciences
来源：
BMC Bioinformatics | / 22卷
关键词：
Machine learning; Nucleosome binding modes; Transcription factors;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Machine learning predicts nucleosome binding modes of transcription factors
    Kishan, K. C.
    Subramanya, Sridevi K.
    Li, Rui
    Cui, Feng
    [J]. BMC BIOINFORMATICS, 2021, 22 (01)
  • [2] Simulating the binding of Pioneer Transcription Factors to the nucleosome
    Huertas, J.
    Maccarthy, C. M.
    Scholer, H. R.
    Cojocaru, V.
    [J]. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2019, 48 : S37 - S37
  • [3] Simulating the binding of Pioneer Transcription Factors to the nucleosome
    Huertas, J.
    Maccarthy, C. M.
    Schoeler, H. R.
    Cojocane, V.
    [J]. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2019, 48 : S88 - S88
  • [4] Structural Features of Transcription Factors Associating with Nucleosome Binding
    Garcia, Meilin Fernandez
    Moore, Cedric D.
    Schulz, Katharine N.
    Alberto, Oscar
    Donague, Greg
    Harrison, Melissa M.
    Zhu, Heng
    Zaret, Kenneth S.
    [J]. MOLECULAR CELL, 2019, 75 (05) : 921 - +
  • [5] Machine learning study of DNA binding by transcription factors from the LacI family
    G. G. Fedonin
    A. B. Rakhmaninova
    Yu. D. Korostelev
    O. N. Laikova
    M. S. Gelfand
    [J]. Molecular Biology, 2011, 45 : 667 - 679
  • [6] Machine learning study of DNA binding by transcription factors from the LacI family
    Fedonin, G. G.
    Rakhmaninova, A. B.
    Korostelev, Yu D.
    Laikova, O. N.
    Gelfand, M. S.
    [J]. MOLECULAR BIOLOGY, 2011, 45 (04) : 667 - 679
  • [7] Machine Learning Study of DNA Binding by Transcription Factors from the LacI Family
    Fedonin, Gennady G.
    Gelfand, Mikhail S.
    [J]. PATTERN RECOGNITION IN BIOINFORMATICS, 2010, 6282 : 15 - 26
  • [8] DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
    Barissi, Sandro
    Sala, Alba
    Wieczor, Milosz
    Battistini, Federica
    Orozco, Modesto
    [J]. NUCLEIC ACIDS RESEARCH, 2022, 50 (16) : 9105 - 9114
  • [9] Nucleosome allostery in pioneer transcription factor binding
    Tan, Cheng
    Takada, Shoji
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (34) : 20586 - 20596
  • [10] Dynamic regulation of transcription factors by nucleosome remodeling
    Li, Ming
    Hada, Arjan
    Sen, Payel
    Olufemi, Lola
    Hall, Michael A.
    Smith, Benjamin Y.
    Forth, Scott
    McKnight, Jeffrey N.
    Patel, Ashok
    Bowman, Gregory D.
    Bartholomew, Blaine
    Wang, Michelle D.
    [J]. ELIFE, 2015, 4 : 1 - 16
12345