High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu

被引:0
|
作者
Guozeng Wang
Yaxin Ren
Tzi Bun Ng
Wolfgang R. Streit
Xiuyun Ye
机构
[1] Fuzhou University,College of Biological Science and Engineering
[2] Fuzhou University,Fujian Key Laboratory of Marine Enzyme Engineering
[3] The Chinese University of Hong Kong,School of Biomedical Sciences, Faculty of Medicine
[4] University of Hamburg,Microbiology and Biotechnology, Biocenter Klein Flottbek
来源
Biotechnology Letters | 2019年 / 41卷
关键词
Amplicon sequencing; Gene diversity; High-throughput; Metagenomics; Soda lake; Xylanase;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
页码:409 / 418
页数:9
相关论文
共 50 条
  • [31] PVAmpliconFinder: a workflow for the identification of human papillomaviruses from high-throughput amplicon sequencing
    Robitaille, Alexis
    Brancaccio, Rosario N.
    Dutta, Sankhadeep
    Rollison, Dana E.
    Leja, Marcis
    Fischer, Nicole
    Grundhoff, Adam
    Gheit, Tarik
    Tommasino, Massimo
    Olivier, Magali
    BMC BIOINFORMATICS, 2020, 21 (01)
  • [32] Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
    Lange, Vinzenz
    Boehme, Irina
    Hofmann, Jan
    Lang, Kathrin
    Sauter, Juergen
    Schoene, Bianca
    Paul, Patrick
    Albrecht, Viviane
    Andreas, Johanna M.
    Baier, Daniel M.
    Nething, Jochen
    Ehninger, Ulf
    Schwarzelt, Carmen
    Pingel, Julia
    Ehninger, Gerhard
    Schmidt, Alexander H.
    BMC GENOMICS, 2014, 15
  • [33] Comparison of invertebrate diversity in lake waters and their resting eggs in sediments, as revealed by high-throughput sequencing (HTS)
    Wang Xiaoyan
    Wang Qing
    Yang Yufeng
    Yu Wenbo
    KNOWLEDGE AND MANAGEMENT OF AQUATIC ECOSYSTEMS, 2020, (421)
  • [34] A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies
    Puente-Sanchez, Fernando
    Aguirre, Jacobo
    Parro, Victor
    NUCLEIC ACIDS RESEARCH, 2016, 44 (04)
  • [35] Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline
    Christian Gaby, John
    Rishishwar, Lavanya
    Valderrama-Aguirre, Lina C.
    Green, Stefan J.
    Valderrama-Aguirre, Augusto
    Jordan, I. King
    Kostka, Joel E.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2018, 84 (04)
  • [36] Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters
    Fitzpatrick, Amy H. H.
    Rupnik, Agnieszka
    O'Shea, Helen
    Crispie, Fiona
    Cotter, Paul D. D.
    Keaveney, Sinead
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2023, 89 (05)
  • [37] An improved method for utilizing high-throughput amplicon sequencing to determine the diets of insectivorous animals
    Jusino, Michelle A.
    Banik, Mark T.
    Palmer, Jonathan M.
    Wray, Amy K.
    Xiao, Lei
    Pelton, Emma
    Barber, Jesse R.
    Kawahara, Akito Y.
    Gratton, Claudio
    Peery, M. Zachariah
    Lindner, Daniel L.
    MOLECULAR ECOLOGY RESOURCES, 2019, 19 (01) : 176 - 190
  • [38] High-Throughput Analysis of DNA Break-Induced Chromosome Rearrangements by Amplicon Sequencing
    Brown, Alexander J.
    Al-Soodani, Aneesa T.
    Saul, Miles
    Her, Stephanie
    Garcia, Juan C.
    Ramsden, Dale A.
    Her, Chengtao
    Roberts, Steven A.
    MECHANISMS OF DNA RECOMBINATION AND GENOME REARRANGEMENTS: INTERSECTION BETWEEN HOMOLOGOUS RECOMBINATION, DNA REPLICATION AND DNA REPAIR, 2018, 601 : 111 - 144
  • [39] Simultaneous genotyping of snails and infecting trematode parasites using high-throughput amplicon sequencing
    Hammoud, Cyril
    Mulero, Stephen
    Van Bocxlaer, Bert
    Boissier, Jerome
    Verschuren, Dirk
    Albrecht, Christian
    Huyse, Tine
    MOLECULAR ECOLOGY RESOURCES, 2022, 22 (02) : 567 - 586
  • [40] Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing
    Menzel, Ulrike
    Greiff, Victor
    Khan, Tarik A.
    Haessler, Ulrike
    Hellmann, Ina
    Friedensohn, Simon
    Cook, Skylar C.
    Pogson, Mark
    Reddy, Sai T.
    PLOS ONE, 2014, 9 (05):