Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

被引:0
|
作者
Amrita Pati
Sabine Gronow
Alla Lapidus
Alex Copeland
Tijana Glavina Del Rio
Matt Nolan
Susan Lucas
Hope Tice
Jan-Fang Cheng
Cliff Han
Olga Chertkov
David Bruce
Roxanne Tapia
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Natalia Ivanova
Konstantinos Mavromatis
Amy Chen
Krishna Palaniappan
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D. Jeffries
John C. Detter
Manfred Rohde
Markus Göker
James Bristow
Jonathan A. Eisen
Victor Markowitz
Philip Hugenholtz
Hans-Peter Klenk
Nikos C. Kyrpides
机构
[1] DOE Joint Genome Institute,Bioscience Division
[2] Los Alamos National Laboratory,Biological Data Management and Technology Center
[3] DSMZ - German Collection of Microorganisms and Cell Cultures GmbH,undefined
[4] Lawrence Berkeley National Laboratory,undefined
[5] Oak Ridge National Laboratory,undefined
[6] HZI - Helmholtz Centre for Infection Research,undefined
[7] University of California Davis Genome Center,undefined
来源
关键词
symbiotic; Loisel; nitrogen fixation; micro-anaerophilic; motile; GEBA;
D O I
暂无
中图分类号
学科分类号
摘要
Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.
引用
收藏
页码:300 / 308
页数:8
相关论文
共 50 条
  • [21] Complete genome sequence of Methanocorpusculum labreanum type strain Z
    Iain J. Anderson
    Magdalena Sieprawska-Lupa
    Eugene Goltsman
    Alla Lapidus
    Alex Copeland
    Tijana Glavina Del Rio
    Hope Tice
    Eileen Dalin
    Kerrie Barry
    Sam Pitluck
    Loren Hauser
    Miriam Land
    Susan Lucas
    Paul Richardson
    William B. Whitman
    Nikos C. Kyrpides
    Standards in Genomic Sciences, 2009, 1 : 197 - 203
  • [22] Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae
    Tellgren-Roth, Christian
    Thorell, Kaisa
    Galperin, Michael Y.
    Krell, Tino
    Romling, Ute
    Sjoling, Asa
    Martin-Rodriguez, Alberto J.
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (31):
  • [23] Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)
    Alicia Clum
    Matt Nolan
    Elke Lang
    Tijana Glavina Del Rio
    Hope Tice
    Alex Copeland
    Jan-Fang Cheng
    Susan Lucas
    Feng Chen
    David Bruce
    Lynne Goodwin
    Sam Pitluck
    Natalia Ivanova
    Konstantinos Mavromatis
    Natalia Mikhailova
    Amrita Pati
    Amy Chen
    Krishna Palaniappan
    Markus Göker
    Stefan Spring
    Miriam Land
    Loren Hauser
    Yun-Juan Chang
    Cynthia C. Jeffries
    Patrick Chain
    Jim Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Nikos C. Kyrpides
    Hans-Peter Klenk
    Alla Lapidus
    Standards in Genomic Sciences, 2009, 1 : 38 - 45
  • [24] Complete genome sequence of Desulfomicrobium baculatum type strain (XT)
    Alex Copeland
    Stefan Spring
    Markus Göker
    Susanne Schneider
    Alla Lapidus
    Tijana Glavina Del Rio
    Hope Tice
    Jan-Fang Cheng
    Susan Lucas
    Feng Chen
    Matt Nolan
    David Bruce
    Lynne Goodwin
    Sam Pitluck
    Natalia Ivanova
    Konstantinos Mavromatis
    Galina Ovchinnikova
    Amrita Pati
    Amy Chen
    Krishna Palaniappan
    Miriam Land
    Loren Hauser
    Yun-Juan Chang
    Cynthia C. Jeffries
    Linda Meincke
    David Sims
    Thomas Brettin
    John C. Detter
    Cliff Han
    Patrick Chain
    Jim Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Nikos C. Kyrpides
    Hans-Peter Klenk
    Standards in Genomic Sciences, 2009, 1 : 29 - 37
  • [25] Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)
    Daligault, Hajnalka
    Lapidus, Alla
    Zeytun, Ahmet
    Nolan, Matt
    Lucas, Susan
    Del Rio, Tijana Glavina
    Tice, Hope
    Cheng, Jan-Fang
    Tapia, Roxanne
    Han, Cliff
    Goodwin, Lynne
    Pitluck, Sam
    Liolios, Konstantinos
    Pagani, Ioanna
    Ivanova, Natalia
    Huntemann, Marcel
    Mavromatis, Konstantinos
    Mikhailova, Natalia
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Land, Miriam
    Hauser, Loren
    Brambilla, Evelyne-Marie
    Rohde, Manfred
    Verbarg, Susanne
    Goeker, Markus
    Bristow, James
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Woyke, Tanja
    STANDARDS IN GENOMIC SCIENCES, 2011, 4 (03): : 352 - 360
  • [26] Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)
    Han, Cliff
    Mwirichia, Romano
    Chertkov, Olga
    Held, Brittany
    Lapidus, Alla
    Nolan, Matt
    Lucas, Susan
    Hammon, Nancy
    Deshpande, Shweta
    Cheng, Jan-Fang
    Tapia, Roxanne
    Goodwin, Lynne
    Pitluck, Sam
    Huntemann, Marcel
    Liolios, Konstantinos
    Ivanova, Natalia
    Pagani, Ioanna
    Mavromatis, Konstantinos
    Ovchinikova, Galina
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Land, Miriam
    Hauser, Loren
    Brambilla, Evelyne-Marie
    Rohde, Manfred
    Spring, Stefan
    Sikorski, Johannes
    Goeker, Markus
    Woyke, Tanja
    Bristow, James
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Detter, John C.
    STANDARDS IN GENOMIC SCIENCES, 2011, 4 (03): : 371 - 380
  • [27] Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)
    Cliff Han
    Romano Mwirichia
    Olga Chertkov
    Brittany Held
    Alla Lapidus
    Matt Nolan
    Susan Lucas
    Nancy Hammon
    Shweta Deshpande
    Jan-Fang Cheng
    Roxanne Tapia
    Lynne Goodwin
    Sam Pitluck
    Marcel Huntemann
    Konstantinos Liolios
    Natalia Ivanova
    Ioanna Pagani
    Konstantinos Mavromatis
    Galina Ovchinikova
    Amrita Pati
    Amy Chen
    Krishna Palaniappan
    Miriam Land
    Loren Hauser
    Evelyne-Marie Brambilla
    Manfred Rohde
    Stefan Spring
    Johannes Sikorski
    Markus Göker
    Tanja Woyke
    James Bristow
    Jonathan A. Eisen
    Victor Markowitz
    Philip Hugenholtz
    Nikos C. Kyrpides
    Hans-Peter Klenk
    John C. Detter
    Standards in Genomic Sciences, 2011, 4 : 371 - 380
  • [28] Complete Genome Sequence of the Type Strain Pseudomonas stutzeri CGMCC 1.1803
    Chen, Ming
    Yan, Yongliang
    Zhang, Wei
    Lu, Wei
    Wang, Jin
    Ping, Shuzhen
    Lin, Min
    JOURNAL OF BACTERIOLOGY, 2011, 193 (21) : 6095 - 6095
  • [29] Complete Genome Sequence of Mycobacterium vaccae Type Strain ATCC 25954
    Ho, Yung S.
    Adroub, Sabir A.
    Abadi, Maram
    Al Alwan, Bader
    Alkhateeb, Reham
    Gao, Ge
    Ragab, Alaa
    Ali, Shahjahan
    van Soolingen, Dick
    Bitter, Wilbert
    Pain, Arnab
    Abdallah, Abdallah M.
    JOURNAL OF BACTERIOLOGY, 2012, 194 (22) : 6339 - 6340
  • [30] Complete Genome Sequence of Lactobacillus crispatus Type Strain ATCC 33820
    Teodori, Lucia
    Colombini, Lorenzo
    Cuppone, Anna Maria
    Lazzeri, Elisa
    Pinzauti, David
    Santoro, Francesco
    Iannelli, Francesco
    Pozzi, Gianni
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (32):