Analyzing allele specific RNA expression using mixture models

被引：0
|
作者：
Rong Lu
Ryan M Smith
Michal Seweryn
Danxin Wang
Katherine Hartmann
Amy Webb
Wolfgang Sadee
Grzegorz A Rempala
机构：
[1] The Ohio State University,Division of Biostatistics, College of Public Health
[2] The Ohio State University,Mathematical Biosciences Institute
[3] The Ohio State University,Center for Pharmacogenomics, College of Medicine
[4] The Ohio State University Wexner Medical Center,Department of Biomedical Informatics, Program in Pharmacogenomics, College of Medicine
来源：
BMC Genomics | / 16卷
关键词：
Allelic RNA expression imbalance (AEI); Allele-specific expression (ASE); RNA-seq; Poisson mixture; Folded Skellam mixture; Human brain;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross
    Ahn, Byeongyong
    Choi, Min-Kyeung
    Yum, Joori
    Cho, In-Cheol
    Kim, Jin-Hoi
    Park, Chankyu
    ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 2019, 32 (12): : 1816 - 1825
  • [22] PanGEA: Identification of allele specific gene expression using the 454 technology
    Robert Kofler
    Tatiana Teixeira Torres
    Tamas Lelley
    Christian Schlötterer
    BMC Bioinformatics, 10
  • [23] PanGEA: Identification of allele specific gene expression using the 454 technology
    Kofler, Robert
    Torres, Tatiana Teixeira
    Lelley, Tamas
    Schloetterer, Christian
    BMC BIOINFORMATICS, 2009, 10
  • [24] Perspectives on Allele-Specific Expression
    Cleary, Siobhan
    Seoighe, Cathal
    ANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE, VOL 4, 2021, 4 : 101 - 122
  • [25] Analysis of Allele Specific Expression——A Survey
    Feng Gu
    Xue Wang
    TsinghuaScienceandTechnology, 2015, 20 (05) : 513 - 529
  • [26] Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression
    Raghupathy, Narayanan
    Choi, Kwangbom
    Vincent, Matthew J.
    Beane, Glen L.
    Sheppard, Keith S.
    Munger, Steven C.
    Korstanje, Ron
    Pardo-Manual de Villena, Fernando
    Churchill, Gary A.
    BIOINFORMATICS, 2018, 34 (13) : 2177 - 2184
  • [27] SCALE: modeling allele-specific gene expression by single-cell RNA sequencing
    Jiang, Yuchao
    Zhang, Nancy R.
    Li, Mingyao
    GENOME BIOLOGY, 2017, 18
  • [28] SCALE: modeling allele-specific gene expression by single-cell RNA sequencing
    Yuchao Jiang
    Nancy R. Zhang
    Mingyao Li
    Genome Biology, 18
  • [29] ASSAYING DIFFERENTIAL RIBOSOMAL-RNA GENE-EXPRESSION WITH ALLELE-SPECIFIC PROBES
    JUPE, ER
    ZIMMER, EA
    MOLECULAR EVOLUTION: PRODUCING THE BIOCHEMICAL DATA, 1993, 224 : 541 - 552
  • [30] Allele-specific silencing of the dominant disease allele in sialuria by RNA interference
    Klootwijk, Riko D.
    Savelkoul, Paul J. M.
    Ciccone, Carla
    Manoli, Irini
    Caplen, Natasha J.
    Krasnewich, Donna M.
    Gahl, William A.
    Huizing, Marjan
    FASEB JOURNAL, 2008, 22 (11): : 3846 - 3852
12345