RETRACTED ARTICLE: Comprehensive gene expression analysis reveals multiple signal pathways associated with prostate cancer

被引:0
|
作者
Yi Liu
Hua Song
Jing Pan
Jing Zhao
机构
[1] General Hospital of Jinan Military Command,Department of Urology
[2] Jinan Municipal Center for Disease Control and Prevention,Department of eurology
[3] Jinan Central Hospital affiliated to Shandong University,undefined
来源
关键词
Differentially expressed genes; Hormone stimulus; Pathway enrichment analysis; Prostate cancer; Protein-protein interaction;
D O I
暂无
中图分类号
学科分类号
摘要
Prostate cancer (PC) depends on androgenic signaling for growth and survival. To data, the exact molecular mechanism of hormone controlling proliferation and tumorigenesis in the PC remains unclear. Therefore, in this study, we explored the differentially expressed genes (DEGs) and identified featured genes related to hormone stimulus from PC. Two sets of gene expression data, including PC and normal control sample, were downloaded from Gene Expression Omnibus (GEO) database. The t-test was used to identify DEGs between PC and controls. Gene ontology (GO) functional annotation was applied to analyze the function of DEGs and screen hormone-related DEGs. Then these hormone-related DEGs were further analyzed in constructed cancer network and Human Protein Reference Database to screen important signaling pathways they participated in. A total of 912 DEGs were obtained which included 326 up-regulated genes and 586 down-regulated genes. GO functional enrichment analysis identified 50 hormone-related DEGs associated with PC. After pathway and PPI network analysis, we found these hormone-related DEGs participated in several important signaling pathways including TGF-β (TGFB2, TGFB3 and TGFBR2), MAPK (TGFB2, TGFB3 and TGFBR2), insulin (PIK3R3, SHC1 and EIF4EBP1), and p53 signaling pathways (CCND2 and CDKN1A). In addition, a total of five hormone-related DEGs (SHC1, CAV1, RXRA, CDKN1A and SRF) were located in the center of PPI network and 12 hormone-related DEGs formed six protein modules. These important signal pathways and hormone-related DEGs may provide potential therapeutic targets for PC.
引用
收藏
页码:117 / 124
页数:7
相关论文
共 50 条
  • [31] RETRACTED: Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer (Retracted Article)
    Acharya, Chaitanya R.
    Hsu, David S.
    Anders, Carey K.
    Anguiano, Ariel
    Salter, Kelly H.
    Walters, Kelli S.
    Redman, Richard C.
    Tuchman, Sascha A.
    Moylan, Cynthia A.
    Mukherjee, Sayan
    Barry, William T.
    Dressman, Holly K.
    Ginsburg, Geoffrey S.
    Marcom, Kelly P.
    Garman, Katherine S.
    Lyman, Gary H.
    Nevins, Joseph R.
    Potti, Anil
    JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2008, 299 (13): : 1574 - 1587
  • [32] Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process
    Chandran, Uma R.
    Ma, Changqing
    Dhir, Rajiv
    Bisceglia, Michelle
    Lyons-Weiler, Maureen
    Liang, Wenjing
    Michalopoulos, George
    Becich, Michael
    Monzon, Federico A.
    BMC CANCER, 2007, 7 (1)
  • [33] Gene expression profiles of prostate cancer reveal involvement of multiple molecular pathways in the metastatic process
    Uma R Chandran
    Changqing Ma
    Rajiv Dhir
    Michelle Bisceglia
    Maureen Lyons-Weiler
    Wenjing Liang
    George Michalopoulos
    Michael Becich
    Federico A Monzon
    BMC Cancer, 7
  • [34] Gene expression analysis reveals distinct pathways of resistance to antiangiogenic therapy in ovarian cancer
    Devapatla, Bharat Kumar
    Jaiprasart, Pharavee
    Woo, Sukyung
    CANCER RESEARCH, 2015, 75
  • [35] RETRACTED: Weighted Gene Coexpression Network Analysis Uncovers Critical Genes and Pathways for Multiple Brain Regions in Parkinson's Disease (Retracted Article)
    Huang, Jianjun
    Liu, Li
    Qin, Lingling
    Huang, Hehua
    Li, Xue
    BIOMED RESEARCH INTERNATIONAL, 2021, 2021
  • [36] Comprehensive analysis of homeobox gene expression in Hodgkin lymphoma cell lines reveals similarities to prostate carcinoma
    Nagel, S
    Burek, C
    Quentmeier, H
    Meyer, C
    Rosenwald, A
    Drexler, HG
    MacLeod, RAF
    BLOOD, 2005, 106 (11) : 284A - 284A
  • [37] Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data
    Ivan P Gorlov
    Jinyoung Byun
    Olga Y Gorlova
    Ana M Aparicio
    Eleni Efstathiou
    Christopher J Logothetis
    BMC Medical Genomics, 2
  • [38] Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data
    Gorlov, Ivan P.
    Byun, Jinyoung
    Gorlova, Olga Y.
    Aparicio, Ana M.
    Efstathiou, Eleni
    Logothetis, Christopher J.
    BMC MEDICAL GENOMICS, 2009, 2
  • [39] Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data
    Gorlov, Ivan
    Byun, Jin Young
    Gorlova, Olga
    Efstathiou, Eleni
    Logothetis, Cristopher
    CANCER RESEARCH, 2009, 69
  • [40] Analysis of the specific pathways and networks of prostate cancer for gene expression profiles in the Chinese population
    Jia-hong Chen
    Hui-chan He
    Fu-neng Jiang
    Julia Militar
    Petor-yang Ran
    Guo-qiang Qin
    Chao Cai
    Xi-bin Chen
    Jin Zhao
    Zi-yao Mo
    Yan-ru Chen
    Jian-guo Zhu
    Xingyin Liu
    Wei-de Zhong
    Medical Oncology, 2012, 29 : 1972 - 1984