xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data

被引:0
|
作者
Karan Uppal
Quinlyn A Soltow
Frederick H Strobel
W Stephen Pittard
Kim M Gernert
Tianwei Yu
Dean P Jones
机构
[1] Emory University,BimCore, School of Medicine
[2] Emory University,Department of Medicine, Division of Pulmonary, Allergy and Critical Care
[3] Emory University,Mass Spectrometry Center
[4] Emory University,Department of Biostatistics and Bioinformatics, Rollins School of Public Health
[5] Emory University,Clinical Biomarkers Laboratory
[6] Georgia Institute of Technology,School of Biology
来源
关键词
Feature Detection; Metabolomics Data; Feature Alignment; High Quality Sample; Poor Quality Sample;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
    Uppal, Karan
    Soltow, Quinlyn A.
    Strobel, Frederick H.
    Pittard, W. Stephen
    Gernert, Kim M.
    Yu, Tianwei
    Jones, Dean P.
    [J]. BMC BIOINFORMATICS, 2013, 14
  • [2] MRMkit: Automated Data Processing for Large-Scale Targeted Metabolomics Analysis
    Teo, Guoshou
    Chew, Wee Siong
    Burla, Bo J.
    Herr, Deron
    Tai, E. Shyong
    Wenk, Markus R.
    Torta, Federico
    Choi, Hyungwon
    [J]. ANALYTICAL CHEMISTRY, 2020, 92 (20) : 13677 - 13682
  • [3] MRMQuant: Automated MRM Data Quantitation for Large-Scale Targeted Metabolomics Analysis
    Lynn, Ke-Shiuan
    Tang, Hsiang-Yu
    Lo, Chi-Jen
    Yang, Cheng-Hung
    Tseng, Yi-Ting
    Cheng, Mei-Ling
    [J]. ANALYTICAL CHEMISTRY, 2024, 96 (33) : 13625 - 13635
  • [4] Large-Scale Non-Targeted Metabolomics Reveals Antioxidant, Nutraceutical and Therapeutic Potentials of Sorghum
    Ramalingam, Ajay Prasanth
    Mohanavel, Williams
    Premnath, Ameena
    Muthurajan, Raveendran
    Prasad, P. V. Vara
    Perumal, Ramasamy
    [J]. ANTIOXIDANTS, 2021, 10 (10)
  • [5] Automated supervised learning pipeline for non-targeted GC-MS data analysis
    Sirén, Kimmo
    Fischer, Ulrich
    Vestner, Jochen
    [J]. Analytica Chimica Acta: X, 2019, 1
  • [6] Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
    Shah, Abzer K. Pakkir
    Walter, Axel
    Ottosson, Filip
    Russo, Francesco
    Navarro-Diaz, Marcelo
    Boldt, Judith
    Kalinski, Jarmo-Charles J.
    Kontou, Eftychia Eva
    Elofson, James
    Polyzois, Alexandros
    Gonzalez-Marin, Carolina
    Farrell, Shane
    Aggerbeck, Marie R.
    Pruksatrakul, Thapanee
    Chan, Nathan
    Wang, Yunshu
    Poechhacker, Magdalena
    Brungs, Corinna
    Camara, Beatriz
    Caraballo-Rodriguez, Andres Mauricio
    Cumsille, Andres
    de Oliveira, Fernanda
    Duehrkop, Kai
    El Abiead, Yasin
    Geibel, Christian
    Graves, Lana G.
    Hansen, Martin
    Heuckeroth, Steffen
    Knoblauch, Simon
    Kostenko, Anastasiia
    Kuijpers, Mirte C. M.
    Mildau, Kevin
    Papadopoulos Lambidis, Stilianos
    Gomes, Paulo Wender Portal
    Schramm, Tilman
    Steuer-Lodd, Karoline
    Stincone, Paolo
    Tayyab, Sibgha
    Vitale, Giovanni Andrea
    Wagner, Berenike C.
    Xing, Shipei
    Yazzie, Marquis T.
    Zuffa, Simone
    de Kruijff, Martinus
    Beemelmanns, Christine
    Link, Hannes
    Mayer, Christoph
    van der Hooft, Justin J. J.
    Damiani, Tito
    Pluskal, Tomas
    [J]. NATURE PROTOCOLS, 2024,
  • [7] MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
    Wang, Xiao
    Liang, Shuang
    Yang, Wenqi
    Yu, Ke
    Liang, Fei
    Zhao, Bing
    Zhu, Xiang
    Zhou, Chao
    Mur, Luis A. J.
    Roberts, Jeremy A.
    Zhang, Junli
    Zhang, Xuebin
    [J]. JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 2024,
  • [8] MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
    Xiao Wang
    Shuang Liang
    Wenqi Yang
    Ke Yu
    Fei Liang
    Bing Zhao
    Xiang Zhu
    Chao Zhou
    Luis AJMur
    Jeremy ARoberts
    Junli Zhang
    Xuebin Zhang
    [J]. Journal of Integrative Plant Biology., 2024, 66 (11) - 2345
  • [9] Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes
    Bazant, Wojtek
    Blevins, Ann S. S.
    Crouch, Kathryn
    Beiting, Daniel P. P.
    [J]. MICROBIOME, 2023, 11 (01)
  • [10] Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes
    Wojtek Bazant
    Ann S. Blevins
    Kathryn Crouch
    Daniel P. Beiting
    [J]. Microbiome, 11