Benchmarking datasets for assembly-based variant calling using high-fidelity long reads

被引：0
|
作者：
Hyunji Lee
Jun Kim
Junho Lee
机构：
[1] Seoul National University,Institute of Molecular Biology and Genetics
[2] Seoul National University,Department of Biological Sciences
[3] Research Institute of Basic Sciences,Department of Convergent Bioscience and Informatics, College of Bioscience and Biotechnology
[4] Seoul National University,undefined
[5] Chungnam National University,undefined
来源：
BMC Genomics | / 24卷
关键词：
Genetic variant; Variant calling; High-fidelity long reads; Long-read sequencing; Benchmark;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads
    Zhang, Yan
    Jiang, Fan
    Yang, Boyuan
    Wang, Sen
    Wang, Hengchao
    Wang, Anqi
    Xu, Dong
    Fan, Wei
    GIGASCIENCE, 2022, 11
  • [22] Long-distance high-fidelity teleportation using singlet states
    Shapiro, JH
    QUANTUM COMMUNICATION, COMPUTING, AND MEASUREMENT 3, 2001, : 367 - 374
  • [23] Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data
    Liu, Yichen Henry
    Luo, Can
    Golding, Staunton G.
    Ioffe, Jacob B.
    Zhou, Xin Maizie
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [24] Leveraging High-Fidelity Datasets for Machine Learning-based Anomaly Detection in Smart Grids
    Hyder, Burhan
    Ahmed, Arman
    Mana, Priya
    Edgar, Thomas
    Niddodi, Shwetha
    2023 11TH WORKSHOP ON MODELLING AND SIMULATION OF CYBER-PHYSICAL ENERGY SYSTEMS, MSCPES, 2023,
  • [25] Aquila_stLFR: diploid genome assembly based structural variant calling package for stLFR linked-reads
    Liu, Yichen Henry
    Grubbs, Griffin L.
    Zhang, Lu
    Fang, Xiaodong
    Dill, David L.
    Sidow, Arend
    Zhou, Xin
    BIOINFORMATICS ADVANCES, 2021, 1 (01):
  • [26] SV-JIM, detailed pairwise structural variant calling using long-reads and genome assemblies
    Todd, Clarence
    Jin, Lingling
    Mcquillan, Ian
    METHODS, 2025, 234 : 305 - 313
  • [27] Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data
    Yichen Henry Liu
    Can Luo
    Staunton G. Golding
    Jacob B. Ioffe
    Xin Maizie Zhou
    Nature Communications, 15
  • [28] Chromosome-Scale, Haplotype-Resolved Genome Assembly of Non-Sex-Reversal Females of Swamp Eel Using High-Fidelity Long Reads and Hi-C Data
    Tian, Hai-Feng
    Hu, Qiaomu
    Lu, Hong-Yi
    Li, Zhong
    FRONTIERS IN GENETICS, 2022, 13
  • [29] Haplotype-resolved Chinese male genome assembly based on high-fidelity sequencing
    Yang, Xiaofei
    Zhao, Xixi
    Qu, Shoufang
    Jia, Peng
    Wang, Bo
    Gao, Shenghan
    Xu, Tun
    Zhang, Wenxin
    Huang, Jie
    Ye, Kai
    FUNDAMENTAL RESEARCH, 2022, 2 (06): : 946 - 953
  • [30] AvoidBench: A high-fidelity vision-based obstacle avoidance benchmarking suite for multi-rotors
    Yu, Hang
    de Croon, Guido C. H. E.
    De Wagger, Christophe
    2023 IEEE INTERNATIONAL CONFERENCE ON ROBOTICS AND AUTOMATION (ICRA 2023), 2023, : 9183 - 9189
12345