Evan Eichler and colleagues present an analysis of how well current commercial SNP platforms accurately capture copy number variants (CNVs). Although they were able accurately predict from Illumina Human 1M genotype data many sites identified in their recent study assessing CNVs in nine human individuals with a fosmid paired-end sequence approach, they find that commonly used platforms offer limited coverage for a large fraction of CNVs.
机构:
Tohoku Univ, Grad Sch Life Sci, Dept Ecol & Evolutionary Biol, Aoba Ku, Sendai, Miyagi 9808578, JapanTohoku Univ, Grad Sch Life Sci, Dept Ecol & Evolutionary Biol, Aoba Ku, Sendai, Miyagi 9808578, Japan
Makino, Takashi
McLysaght, Aoife
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Univ Dublin Trinity Coll, Smurfit Inst Genet, Dublin 2, IrelandTohoku Univ, Grad Sch Life Sci, Dept Ecol & Evolutionary Biol, Aoba Ku, Sendai, Miyagi 9808578, Japan
McLysaght, Aoife
Kawata, Masakado
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Tohoku Univ, Grad Sch Life Sci, Dept Ecol & Evolutionary Biol, Aoba Ku, Sendai, Miyagi 9808578, JapanTohoku Univ, Grad Sch Life Sci, Dept Ecol & Evolutionary Biol, Aoba Ku, Sendai, Miyagi 9808578, Japan
机构:
Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
SUNY Stony Brook, Mol & Cellular Biol Program, Stony Brook, NY 11794 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Baslan, Timour
Kendall, Jude
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Kendall, Jude
Rodgers, Linda
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Rodgers, Linda
Cox, Hilary
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Cox, Hilary
Riggs, Mike
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Riggs, Mike
Stepansky, Asya
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Stepansky, Asya
Troge, Jennifer
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Troge, Jennifer
Ravi, Kandasamy
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Ravi, Kandasamy
Esposito, Diane
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Esposito, Diane
Lakshmi, B.
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Ontario Inst Canc Res, Toronto, ON, CanadaCold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Lakshmi, B.
Wigler, Michael
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Wigler, Michael
Navin, Nicholas
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Univ Texas MD Anderson Canc Ctr, Dept Genet, Houston, TX 77030 USA
Univ Texas MD Anderson Canc Ctr, Dept Bioinformat & Computat Biol, Houston, TX 77030 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
Navin, Nicholas
Hicks, James
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Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USACold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA